C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Hoxa adjacent long noncoding RNA 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000085412 Linchoxa1 10090 + 6:52102949-52113684 lincRNA
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000125374 Linchoxa1-001 52102949-52112528 lincRNA
  ENSMUST00000155758 Linchoxa1-002 52103003-52112188 lincRNA
  ENSMUST00000189071 Linchoxa1-003 52102994-52113684 lincRNA

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000125374ENSMUST00000155758ENSMUST00000189071
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000125374 N/A N/A 0.074±0.00 0.219±0.02 N/A N/A N/A 0.076±0.00 0.403±0.00 0.340±0.26 0.357±0.14 0.163±0.08 N/A
ENSMUST00000155758 N/A N/A N/A N/A N/A N/A 1.310±0.00 0.070±0.00 N/A 0.253±0.09 N/A 0.138±0.08 N/A
ENSMUST00000189071 0.793±0.62 0.052±0.03 0.490±0.00 0.289±0.12 0.190±0.00 0.407±0.17 3.154±0.43 0.076±0.02 0.212±0.11 0.316±0.08 0.199±0.00 0.128±0.01 0.091±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008JP CIL_0008JP_0002 VISTA 6:51557235-52158614
CIL_0008V2 CIL_0008V2_0002 VISTA 6:51578612-52179694
CIL_0003PD CIL_0003PD_0002 CGP 6:51859166-52158317
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287

Gene Ontology
No GO terms available.

Homologs

No Homologs available.

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