C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003PD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000005020-ENSG00000105991 CGP 9606 7:26667062-27095996
GeneTranscriptPositionBiotype
ENSG00000005020 (SKAP2)
src kinase associated phosphoprotein 2 		ENST00000345317 (SKAP2-001) 26667062-26864743 protein_coding
ENST00000432747 (SKAP2-007) 26738840-26995239 protein_coding
ENST00000468712 (SKAP2-002) 26726682-26857678 retained_intron
ENST00000481204 (SKAP2-003) 26844029-26865113 processed_transcript
ENST00000487720 (SKAP2-006) 26844030-26864585 processed_transcript
ENST00000489977 (SKAP2-009) 26690307-26742475 processed_transcript
ENST00000490456 (SKAP2-004) 26739887-26858159 processed_transcript
ENST00000495802 (SKAP2-005) 26726889-26855151 processed_transcript
ENST00000497511 (SKAP2-008) 26746567-26864587 processed_transcript
ENSG00000105991 (HOXA1)
homeobox A1 		ENST00000343060 (HOXA1-001) 27092993-27095974 protein_coding
ENST00000355633 (HOXA1-002) 27093313-27095996 protein_coding
ENSG00000213786 (NHP2P2)
NHP2 ribonucleoprotein pseudogene 2 		ENST00000396362 (NHP2P2-001) 27048169-27048628 processed_pseudogene
ENSG00000213787 (RPL7AP38)
ribosomal protein L7a pseudogene 38 		ENST00000441433 (RPL7AP38-001) 26922110-26922912 processed_pseudogene
ENSG00000214869 (TPM3P4)
tropomyosin 3 pseudogene 4 		ENST00000425942 (TPM3P4-001) 27023737-27024907 processed_pseudogene
ENSG00000226059 (HMGB3P20)
high mobility group box 3 pseudogene 20 		ENST00000417997 (HMGB3P20-001) 26982768-26983367 processed_pseudogene
ENSG00000233429 (HOTAIRM1)
HOXA transcript antisense RNA, myeloid-specific 1 		ENST00000425358 (HOTAIRM1-004) 27096233-27099966 antisense
ENST00000428939 (HOTAIRM1-003) 27098839-27100139 antisense
ENST00000429611 (HOTAIRM1-002) 27096124-27099966 antisense
ENST00000434063 (HOTAIRM1-001) 27096094-27100154 antisense
ENST00000495032 (HOTAIRM1-005) 27095647-27096327 antisense
ENST00000593300 (HOTAIRM1-006) 27099619-27100265 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0003PD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000059182-ENSMUSG00000029844 CGP 10090 6:51859166-52158317
GeneTranscriptPositionBiotype
ENSMUSG00000029844 (Hoxa1)
homeobox A1 		ENSMUST00000000964 (Hoxa1-001) 52155590-52158317 protein_coding
ENSMUST00000120363 (Hoxa1-002) 52155595-52158317 protein_coding
ENSMUSG00000059182 (Skap2)
src family associated phosphoprotein 2 		ENSMUST00000078214 (Skap2-201) 51859166-52012549 protein_coding
ENSMUSG00000081979 (Rps8-ps3)
ribosomal protein S8, pseudogene 3 		ENSMUST00000121011 (Rps8-ps3-001) 52118242-52118891 processed_pseudogene
ENSMUSG00000085412 (Linchoxa1)
Hoxa adjacent long noncoding RNA 1 		ENSMUST00000125374 (Linchoxa1-001) 52102949-52112528 lincRNA
ENSMUST00000155758 (Linchoxa1-002) 52103003-52112188 lincRNA
ENSMUST00000189071 (Linchoxa1-003) 52102994-52113684 lincRNA
ENSMUSG00000087658 (Hotairm1)
Hoxa transcript antisense RNA, myeloid-specific 1 		ENSMUST00000129546 (Hotairm1-003) 52156902-52158528 antisense
ENSMUST00000132559 (Hotairm1-001) 52158432-52162119 antisense
ENSMUST00000159006 (Hotairm1-002) 52158524-52162020 antisense

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PD_0001ENSG00000005020ENST00000345317ENST00000432747ENST00000468712ENST00000481204ENST00000487720ENST00000489977ENST00000490456ENST00000495802ENST00000497511ENSG00000105991ENST00000343060ENST00000355633ENSG00000213786ENST00000396362ENSG00000213787ENST00000441433ENSG00000214869ENST00000425942ENSG00000226059ENST00000417997ENSG00000233429ENST00000425358ENST00000428939ENST00000429611ENST00000434063ENST00000495032ENST00000593300CIL_0003PD_0002ENSMUSG00000029844ENSMUST00000000964ENSMUST00000120363ENSMUSG00000059182ENSMUST00000078214ENSMUSG00000081979ENSMUST00000121011ENSMUSG00000085412ENSMUST00000125374ENSMUST00000155758ENSMUST00000189071ENSMUSG00000087658ENSMUST00000129546ENSMUST00000132559ENSMUST00000159006
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PD_0001ENSG00000005020ENST00000345317ENST00000489977ENST00000495802ENST00000497511ENSG00000105991ENST00000343060ENST00000355633ENSG00000213786ENST00000396362ENSG00000213787ENST00000441433ENSG00000214869ENST00000425942ENSG00000226059ENST00000417997ENSG00000233429ENST00000425358ENST00000428939ENST00000429611ENST00000434063ENST00000593300CIL_0003PD_0002ENSMUSG00000029844ENSMUST00000000964ENSMUST00000120363ENSMUSG00000059182ENSMUST00000078214ENSMUSG00000081979ENSMUST00000121011ENSMUSG00000085412ENSMUST00000125374ENSMUST00000155758ENSMUST00000189071ENSMUSG00000087658ENSMUST00000129546ENSMUST00000132559ENSMUST00000159006
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000005020 ENST00000345317 7.090±0.00 5.800±0.00 N/A 4.821±0.88 6.913±2.22 6.140±2.97 1.402±0.00 4.154±3.53 3.128±2.78 9.749±0.96 4.660±0.00 3.838±1.55 2.704±0.72 7.515±0.44
ENST00000432747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489977 N/A N/A 5.305±0.00 N/A 5.571±0.00 N/A N/A N/A 9.235±0.00 N/A N/A 7.308±0.00 N/A 12.610±0.00
ENST00000490456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.770±0.00 N/A N/A N/A
ENST00000497511 N/A N/A N/A N/A N/A N/A N/A 2.115±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000105991 ENST00000343060 N/A N/A N/A N/A N/A N/A N/A N/A 0.351±0.00 N/A N/A 0.224±0.11 N/A N/A
ENST00000355633 0.224±0.00 0.902±0.00 0.060±0.00 0.016±0.00 0.390±0.25 0.441±0.06 0.081±0.00 N/A 0.092±0.00 N/A 0.107±0.00 0.922±0.48 0.121±0.04 0.240±0.10
ENSG00000213786 ENST00000396362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.087±0.00 N/A N/A 0.108±0.06
ENSG00000213787 ENST00000441433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00
ENSG00000214869 ENST00000425942 N/A 0.018±0.00 N/A 0.107±0.00 0.018±0.00 N/A 0.033±0.00 0.037±0.00 N/A 0.095±0.00 0.081±0.00 N/A N/A 0.079±0.00
ENSG00000226059 ENST00000417997 0.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.450±0.00
ENSG00000233429 ENST00000425358 N/A N/A N/A N/A 5.592±0.00 1.480±0.00 0.190±0.00 N/A N/A N/A N/A 0.520±0.00 0.134±0.02 N/A
ENST00000428939 N/A N/A N/A N/A 1.111±0.41 0.641±0.00 0.223±0.00 0.928±0.37 0.913±0.00 2.844±2.33 N/A 1.509±0.00 N/A 0.753±0.00
ENST00000429611 N/A N/A N/A N/A 0.456±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434063 1.976±0.00 2.676±0.00 N/A N/A N/A N/A N/A 2.272±0.00 N/A N/A 0.286±0.00 0.595±0.00 0.084±0.00 0.457±0.00
ENST00000495032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593300 0.600±0.00 2.790±0.00 0.237±0.00 N/A 1.416±0.60 1.111±0.00 0.179±0.00 1.941±0.00 0.380±0.00 2.977±1.89 0.428±0.00 N/A 0.175±0.03 0.880±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029844 ENSMUST00000000964 0.348±0.16 0.318±0.00 0.200±0.01 0.239±0.12 0.643±0.19 0.209±0.05 0.105±0.05 0.457±0.12 0.154±0.05 0.818±0.10 N/A 0.293±0.08 0.830±0.53 N/A
ENSMUST00000120363 0.252±0.09 N/A 0.176±0.01 N/A 0.763±0.48 0.259±0.00 0.069±0.03 0.230±0.04 0.137±0.13 N/A 0.092±0.03 0.310±0.13 0.361±0.28 0.043±0.02
ENSMUSG00000059182 ENSMUST00000078214 7.618±0.74 5.855±2.44 9.933±1.16 2.847±0.81 5.197±2.07 7.116±0.82 2.158±0.44 8.499±1.08 8.374±5.01 12.553±2.47 1.164±0.24 6.338±3.88 12.076±1.92 10.620±3.89
ENSMUSG00000081979 ENSMUST00000121011 N/A N/A N/A N/A 0.119±0.00 N/A N/A 0.203±0.09 N/A N/A 0.099±0.05 N/A N/A N/A
ENSMUSG00000085412 ENSMUST00000125374 N/A N/A N/A 0.074±0.00 0.219±0.02 N/A N/A N/A 0.076±0.00 0.403±0.00 0.340±0.26 0.357±0.14 0.163±0.08 N/A
ENSMUST00000155758 N/A N/A N/A N/A N/A N/A N/A 1.310±0.00 0.070±0.00 N/A 0.253±0.09 N/A 0.138±0.08 N/A
ENSMUST00000189071 0.793±0.62 N/A 0.052±0.03 0.490±0.00 0.289±0.12 0.190±0.00 0.407±0.17 3.154±0.43 0.076±0.02 0.212±0.11 0.316±0.08 0.199±0.00 0.128±0.01 0.091±0.00
ENSMUSG00000087658 ENSMUST00000129546 N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A N/A N/A N/A N/A N/A 0.148±0.00
ENSMUST00000132559 0.957±0.00 3.147±1.54 0.443±0.02 0.219±0.14 N/A 0.231±0.00 0.127±0.05 1.672±0.43 0.243±0.12 0.877±0.00 0.155±0.05 0.881±0.26 1.076±0.61 0.158±0.09
ENSMUST00000159006 11.192±0.00 11.973±0.00 N/A 4.641±0.00 N/A N/A 1.063±0.00 9.798±1.47 0.500±0.23 13.486±0.00 1.870±0.93 10.230±0.00 31.593±18.29 1.313±1.45

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