C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008V2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs296 VISTA 9606 7:26389078-26990183
GeneTranscriptPositionBiotype
ENSG00000005020 (SKAP2)
src kinase associated phosphoprotein 2 		ENST00000345317 (SKAP2-001) 26667062-26864743 protein_coding
ENST00000432747 (SKAP2-007) 26738840-26995239 protein_coding
ENST00000468712 (SKAP2-002) 26726682-26857678 retained_intron
ENST00000481204 (SKAP2-003) 26844029-26865113 processed_transcript
ENST00000487720 (SKAP2-006) 26844030-26864585 processed_transcript
ENST00000489977 (SKAP2-009) 26690307-26742475 processed_transcript
ENST00000490456 (SKAP2-004) 26739887-26858159 processed_transcript
ENST00000495802 (SKAP2-005) 26726889-26855151 processed_transcript
ENST00000497511 (SKAP2-008) 26746567-26864587 processed_transcript
ENSG00000122548 (KIAA0087)
KIAA0087 		ENST00000242109 (KIAA0087-201) 26535813-26538618 protein_coding
ENSG00000213787 (RPL7AP38)
ribosomal protein L7a pseudogene 38 		ENST00000441433 (RPL7AP38-001) 26922110-26922912 processed_pseudogene
ENSG00000214870 (AC004540.5)
 ENST00000420774 (AC004540.5-003) 26398652-26399654 lincRNA
ENST00000421862 (AC004540.5-004) 26398601-26494144 lincRNA
ENST00000430548 (AC004540.5-006) 26398601-26480022 lincRNA
ENST00000439120 (AC004540.5-001) 26398593-26494256 lincRNA
ENST00000448056 (AC004540.5-005) 26440259-26494114 lincRNA
ENST00000449537 (AC004540.5-002) 26398613-26399563 lincRNA
ENSG00000222004 (C7orf71)
chromosome 7 open reading frame 71 		ENST00000409974 (C7orf71-001) 26637871-26647270 lincRNA
ENST00000614528 (C7orf71-201) 26638457-26647305 protein_coding
ENSG00000226059 (HMGB3P20)
high mobility group box 3 pseudogene 20 		ENST00000417997 (HMGB3P20-001) 26982768-26983367 processed_pseudogene
ENSG00000233760 (AC004947.2)
 ENST00000420912 (AC004947.2-001) 26551822-26557200 lincRNA
ENST00000430426 (AC004947.2-002) 26551896-26555276 lincRNA
ENST00000457000 (AC004947.2-003) 26551839-26555114 lincRNA
ENSG00000280255 (RP5-1007F24.1)
 ENST00000623092 (RP5-1007F24.1-001) 26538378-26541048 TEC

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0008V2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs296 VISTA 10090 6:51578612-52179694
GeneTranscriptPositionBiotype
ENSMUSG00000014704 (Hoxa2)
homeobox A2 		ENSMUST00000014848 (Hoxa2-001) 52162511-52164831 protein_coding
ENSMUSG00000029844 (Hoxa1)
homeobox A1 		ENSMUST00000000964 (Hoxa1-001) 52155590-52158317 protein_coding
ENSMUST00000120363 (Hoxa1-002) 52155595-52158317 protein_coding
ENSMUSG00000038301 (Snx10)
sorting nexin 10 		ENSMUST00000049152 (Snx10-001) 51523901-51590679 protein_coding
ENSMUST00000114439 (Snx10-004) 51544524-51589072 protein_coding
ENSMUST00000137212 (Snx10-006) 51524285-51588436 protein_coding
ENSMUST00000140560 (Snx10-005) 51524260-51580377 protein_coding
ENSMUST00000149024 (Snx10-003) 51544566-51589043 nonsense_mediated_decay
ENSMUST00000155724 (Snx10-002) 51523982-51564088 retained_intron
ENSMUST00000179365 (Snx10-201) 51544523-51590670 protein_coding
ENSMUSG00000056468 (5730596B20Rik)
RIKEN cDNA 5730596B20 gene 		ENSMUST00000070587 (5730596B20Rik-201) 52177498-52180851 protein_coding
ENSMUSG00000059182 (Skap2)
src family associated phosphoprotein 2 		ENSMUST00000078214 (Skap2-201) 51859166-52012549 protein_coding
ENSMUSG00000079560 (Hoxa3)
homeobox A3 		ENSMUST00000114434 (Hoxa3-001) 52169062-52213115 protein_coding
ENSMUST00000134831 (Hoxa3-004) 52172571-52183855 protein_coding
ENSMUST00000142764 (Hoxa3-003) 52199151-52213336 retained_intron
ENSMUST00000148446 (Hoxa3-002) 52180560-52184874 processed_transcript
ENSMUSG00000081979 (Rps8-ps3)
ribosomal protein S8, pseudogene 3 		ENSMUST00000121011 (Rps8-ps3-001) 52118242-52118891 processed_pseudogene
ENSMUSG00000085412 (Linchoxa1)
Hoxa adjacent long noncoding RNA 1 		ENSMUST00000125374 (Linchoxa1-001) 52102949-52112528 lincRNA
ENSMUST00000155758 (Linchoxa1-002) 52103003-52112188 lincRNA
ENSMUST00000189071 (Linchoxa1-003) 52102994-52113684 lincRNA
ENSMUSG00000085696 (Hoxaas3)
Hoxa cluster antisense RNA 3 		ENSMUST00000131502 (Hoxaas3-003) 52201124-52213615 antisense
ENSMUST00000136806 (Hoxaas3-001) 52175235-52215076 antisense
ENSMUST00000139055 (Hoxaas3-002) 52175217-52193020 antisense
ENSMUSG00000087626 (Gm15050)
predicted gene 15050 		ENSMUST00000133723 (Gm15050-001) 52172881-52174059 antisense
ENSMUSG00000087658 (Hotairm1)
Hoxa transcript antisense RNA, myeloid-specific 1 		ENSMUST00000129546 (Hotairm1-003) 52156902-52158528 antisense
ENSMUST00000132559 (Hotairm1-001) 52158432-52162119 antisense
ENSMUST00000159006 (Hotairm1-002) 52158524-52162020 antisense
ENSMUSG00000098749 (Gm27477)
predicted gene, 27477 		ENSMUST00000184649 (Gm27477-201) 52162125-52162267 misc_RNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008V2_0001ENSG00000005020ENST00000345317ENST00000432747ENST00000468712ENST00000481204ENST00000487720ENST00000489977ENST00000490456ENST00000495802ENST00000497511ENSG00000122548ENST00000242109ENSG00000213787ENST00000441433ENSG00000214870ENST00000420774ENST00000421862ENST00000430548ENST00000439120ENST00000448056ENST00000449537ENSG00000222004ENST00000409974ENST00000614528ENSG00000226059ENST00000417997ENSG00000233760ENST00000420912ENST00000430426ENST00000457000ENSG00000280255ENST00000623092CIL_0008V2_0002ENSMUSG00000014704ENSMUST00000014848ENSMUSG00000029844ENSMUST00000000964ENSMUST00000120363ENSMUSG00000038301ENSMUST00000049152ENSMUST00000114439ENSMUST00000137212ENSMUST00000140560ENSMUST00000149024ENSMUST00000155724ENSMUST00000179365ENSMUSG00000056468ENSMUST00000070587ENSMUSG00000059182ENSMUST00000078214ENSMUSG00000079560ENSMUST00000114434ENSMUST00000134831ENSMUST00000142764ENSMUST00000148446ENSMUSG00000081979ENSMUST00000121011ENSMUSG00000085412ENSMUST00000125374ENSMUST00000155758ENSMUST00000189071ENSMUSG00000085696ENSMUST00000131502ENSMUST00000136806ENSMUST00000139055ENSMUSG00000087626ENSMUST00000133723ENSMUSG00000087658ENSMUST00000129546ENSMUST00000132559ENSMUST00000159006ENSMUSG00000098749ENSMUST00000184649
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008V2_0001ENSG00000005020ENST00000345317ENST00000489977ENST00000495802ENST00000497511ENSG00000122548ENST00000242109ENSG00000213787ENST00000441433ENSG00000214870ENST00000420774ENST00000421862ENST00000439120ENST00000448056ENST00000449537ENSG00000222004ENST00000409974ENST00000614528ENSG00000226059ENST00000417997ENSG00000233760ENST00000420912ENST00000430426ENST00000457000ENSG00000280255ENST00000623092CIL_0008V2_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000005020 ENST00000345317 7.090±0.00 5.800±0.00 N/A 4.821±0.88 6.913±2.22 6.140±2.97 1.402±0.00 4.154±3.53 3.128±2.78 9.749±0.96 4.660±0.00 3.838±1.55 2.704±0.72 7.515±0.44
ENST00000432747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489977 N/A N/A 5.305±0.00 N/A 5.571±0.00 N/A N/A N/A 9.235±0.00 N/A N/A 7.308±0.00 N/A 12.610±0.00
ENST00000490456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.770±0.00 N/A N/A N/A
ENST00000497511 N/A N/A N/A N/A N/A N/A N/A 2.115±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000122548 ENST00000242109 N/A N/A 0.125±0.00 N/A 0.025±0.00 N/A N/A 0.108±0.00 N/A 0.237±0.00 N/A 0.018±0.00 N/A N/A
ENSG00000213787 ENST00000441433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00
ENSG00000214870 ENST00000420774 0.656±0.00 1.079±0.00 N/A 0.204±0.00 1.098±0.00 N/A N/A 1.310±0.00 N/A N/A 0.241±0.00 0.281±0.00 0.739±0.37 1.023±0.17
ENST00000421862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.261±0.00 N/A 0.368±0.00
ENST00000430548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439120 0.736±0.00 2.167±0.00 0.308±0.00 2.083±0.00 2.308±1.57 0.504±0.00 0.238±0.00 2.316±0.00 N/A 0.704±0.00 0.405±0.25 0.963±0.00 0.636±0.16 1.062±0.18
ENST00000448056 N/A N/A N/A N/A 0.640±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.348±0.00
ENST00000449537 N/A 1.164±0.00 N/A 0.744±0.00 1.101±0.00 N/A N/A N/A 0.127±0.00 0.637±0.00 N/A N/A 0.730±0.19 N/A
ENSG00000222004 ENST00000409974 0.028±0.00 0.050±0.00 N/A N/A 0.119±0.00 0.038±0.00 0.098±0.00 0.032±0.02 0.056±0.00 0.050±0.00 N/A 0.014±0.00 0.022±0.00 0.643±0.00
ENST00000614528 N/A N/A 0.057±0.00 N/A 0.070±0.00 0.005±0.00 N/A N/A N/A N/A N/A N/A N/A 0.393±0.06
ENSG00000226059 ENST00000417997 0.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.450±0.00
ENSG00000233760 ENST00000420912 0.033±0.00 0.069±0.00 N/A 0.004±0.00 0.113±0.00 N/A 0.009±0.00 N/A 0.112±0.00 N/A N/A 0.070±0.00 0.053±0.02 0.034±0.00
ENST00000430426 0.098±0.00 N/A N/A N/A 0.181±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457000 N/A N/A N/A N/A 0.506±0.00 0.118±0.01 0.015±0.00 0.153±0.00 N/A 0.394±0.26 N/A N/A 0.110±0.00 0.303±0.09
ENSG00000280255 ENST00000623092 0.030±0.00 0.169±0.00 0.077±0.00 0.487±0.00 0.110±0.00 0.066±0.00 N/A 0.197±0.00 0.006±0.00 0.081±0.00 N/A 0.062±0.03 0.145±0.09 0.049±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000014704 ENSMUST00000014848 N/A N/A N/A 4.613±3.15 N/A N/A 0.622±0.07 N/A 0.406±0.17 4.496±0.33 N/A N/A N/A N/A
ENSMUSG00000029844 ENSMUST00000000964 0.348±0.16 0.318±0.00 0.200±0.01 0.239±0.12 0.643±0.19 0.209±0.05 0.105±0.05 0.457±0.12 0.154±0.05 0.818±0.10 N/A 0.293±0.08 0.830±0.53 N/A
ENSMUST00000120363 0.252±0.09 N/A 0.176±0.01 N/A 0.763±0.48 0.259±0.00 0.069±0.03 0.230±0.04 0.137±0.13 N/A 0.092±0.03 0.310±0.13 0.361±0.28 0.043±0.02
ENSMUSG00000038301 ENSMUST00000049152 1.985±0.58 0.725±0.36 3.252±0.73 7.120±0.32 1.449±0.46 0.282±0.12 0.894±0.24 0.820±0.27 1.647±0.84 1.830±0.49 2.550±1.13 1.037±0.66 5.530±2.03 N/A
ENSMUST00000114439 2.341±0.00 N/A N/A N/A 1.848±0.45 N/A 0.566±0.00 0.954±0.19 N/A 1.391±0.00 N/A 0.972±0.20 N/A 0.190±0.00
ENSMUST00000137212 4.143±0.46 0.740±0.36 N/A N/A 3.690±1.34 0.741±0.55 0.860±0.11 0.863±0.17 1.850±0.22 1.069±0.25 N/A 0.916±0.50 N/A N/A
ENSMUST00000140560 N/A N/A N/A 22.620±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.744±0.00
ENSMUST00000149024 N/A 0.457±0.00 N/A 24.131±0.00 N/A N/A N/A N/A N/A N/A N/A 4.367±2.98 21.929±9.21 0.636±0.00
ENSMUST00000155724 0.562±0.00 0.182±0.09 N/A N/A 0.486±0.08 N/A N/A 0.106±0.00 0.444±0.01 0.439±0.12 N/A 0.439±0.21 N/A N/A
ENSMUST00000179365 4.063±0.62 0.814±0.38 2.054±0.73 N/A 3.783±1.33 1.079±0.34 0.740±0.36 0.395±0.13 2.786±2.65 0.601±0.05 1.667±1.09 2.385±1.60 5.538±2.70 0.908±0.00
ENSMUSG00000056468 ENSMUST00000070587 N/A N/A N/A N/A N/A N/A 0.087±0.00 N/A 0.072±0.00 N/A N/A 1.118±0.19 0.133±0.09 N/A
ENSMUSG00000059182 ENSMUST00000078214 7.618±0.74 5.855±2.44 9.933±1.16 2.847±0.81 5.197±2.07 7.116±0.82 2.158±0.44 8.499±1.08 8.374±5.01 12.553±2.47 1.164±0.24 6.338±3.88 12.076±1.92 10.620±3.89
ENSMUSG00000079560 ENSMUST00000114434 1.072±0.00 2.324±0.28 3.416±0.00 0.626±0.00 2.427±0.00 5.590±0.60 0.254±0.07 4.184±0.92 0.346±0.20 3.996±1.39 1.313±0.11 3.190±1.16 0.381±0.20 2.564±0.16
ENSMUST00000134831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081979 ENSMUST00000121011 N/A N/A N/A N/A 0.119±0.00 N/A N/A 0.203±0.09 N/A N/A 0.099±0.05 N/A N/A N/A
ENSMUSG00000085412 ENSMUST00000125374 N/A N/A N/A 0.074±0.00 0.219±0.02 N/A N/A N/A 0.076±0.00 0.403±0.00 0.340±0.26 0.357±0.14 0.163±0.08 N/A
ENSMUST00000155758 N/A N/A N/A N/A N/A N/A N/A 1.310±0.00 0.070±0.00 N/A 0.253±0.09 N/A 0.138±0.08 N/A
ENSMUST00000189071 0.793±0.62 N/A 0.052±0.03 0.490±0.00 0.289±0.12 0.190±0.00 0.407±0.17 3.154±0.43 0.076±0.02 0.212±0.11 0.316±0.08 0.199±0.00 0.128±0.01 0.091±0.00
ENSMUSG00000085696 ENSMUST00000131502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.274±2.00 N/A N/A
ENSMUST00000136806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087626 ENSMUST00000133723 0.343±0.15 N/A 0.643±0.14 0.158±0.00 0.456±0.17 N/A 0.086±0.00 0.343±0.20 0.212±0.09 0.445±0.28 0.337±0.22 1.659±0.30 0.387±0.29 0.160±0.06
ENSMUSG00000087658 ENSMUST00000129546 N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A N/A N/A N/A N/A N/A 0.148±0.00
ENSMUST00000132559 0.957±0.00 3.147±1.54 0.443±0.02 0.219±0.14 N/A 0.231±0.00 0.127±0.05 1.672±0.43 0.243±0.12 0.877±0.00 0.155±0.05 0.881±0.26 1.076±0.61 0.158±0.09
ENSMUST00000159006 11.192±0.00 11.973±0.00 N/A 4.641±0.00 N/A N/A 1.063±0.00 9.798±1.47 0.500±0.23 13.486±0.00 1.870±0.93 10.230±0.00 31.593±18.29 1.313±1.45
ENSMUSG00000098749 ENSMUST00000184649 N/A N/A 13.908±7.12 11.007±6.07 N/A N/A N/A N/A 3.460±0.00 N/A 4.895±2.37 28.836±0.00 7.105±0.92 N/A

Loading