C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 4930544D05 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000087279 4930544D05Rik 10090 + 11:70615848-70616890 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000125387 4930544D05Rik-001 70615894-70616870 retained_intron
  ENSMUST00000135865 4930544D05Rik-002 70615897-70616890 nonsense_mediated_decay
  ENSMUST00000144960 4930544D05Rik-003 70615910-70616877 protein_coding
  ENSMUST00000180052 4930544D05Rik-004 70615848-70616875 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000125387ENSMUST00000135865ENSMUST00000144960ENSMUST00000180052
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000125387 0.085±0.04 0.368±0.00 0.027±0.00 N/A 0.582±0.58 N/A 0.119±0.05 0.139±0.11 0.159±0.05 1.578±0.18 0.469±0.33 N/A 15.272±0.00
ENSMUST00000135865 N/A N/A N/A 0.080±0.00 0.204±0.00 N/A 0.104±0.00 0.033±0.00 0.060±0.00 N/A N/A N/A 12.378±0.00
ENSMUST00000144960 N/A N/A N/A 0.015±0.00 0.121±0.00 N/A 0.112±0.05 N/A N/A N/A 0.181±0.05 0.011±0.00 136.708±40.39
ENSMUST00000180052 N/A N/A 0.065±0.00 N/A N/A 0.109±0.06 0.059±0.03 0.011±0.00 0.102±0.01 0.929±0.05 N/A N/A 215.804±14.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001R8 CIL_0001R8_0002 CGP 11:70562881-70619216
CIL_0000P4 CIL_0000P4_0002 CGP 11:70614883-70619216
CIL_0004WF CIL_0004WF_0002 CGP 11:70615848-70642036

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000205710 C17orf107 chromosome 17 open reading frame 107 protein_coding Homo_sapiens

Loading