C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0004WF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000205710-ENSG00000185245 CGP 9606 17:4899418-4935030
GeneTranscriptPositionBiotype
ENSG00000108556 (CHRNE)
cholinergic receptor, nicotinic, epsilon (muscle)
ENST00000293780 (CHRNE-001) 4897774-4903074 protein_coding
ENST00000572438 (CHRNE-002) 4898057-4901811 retained_intron
ENST00000575637 (CHRNE-003) 4901009-4902630 processed_transcript
ENSG00000185245 (GP1BA)
glycoprotein Ib (platelet), alpha polypeptide
ENST00000329125 (GP1BA-001) 4932297-4935030 protein_coding
ENST00000611961 (GP1BA-201) 4932330-4934979 protein_coding
ENSG00000205710 (C17orf107)
chromosome 17 open reading frame 107
ENST00000381365 (C17orf107-001) 4899536-4902932 protein_coding
ENST00000521575 (C17orf107-002) 4899418-4900799 protein_coding
CIL_0004WF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000087279-ENSMUSG00000050675 CGP 10090 11:70615848-70642036
GeneTranscriptPositionBiotype
ENSMUSG00000014609 (Chrne)
cholinergic receptor, nicotinic, epsilon polypeptide
ENSMUST00000014753 (Chrne-002) 70614883-70619216 protein_coding
ENSMUST00000102556 (Chrne-001) 70614883-70619194 protein_coding
ENSMUST00000134836 (Chrne-003) 70614893-70615697 retained_intron
ENSMUST00000135920 (Chrne-005) 70614885-70615673 retained_intron
ENSMUSG00000050675 (Gp1ba)
glycoprotein 1b, alpha polypeptide
ENSMUST00000055184 (Gp1ba-201) 70639122-70642036 protein_coding
ENSMUST00000108551 (Gp1ba-001) 70639144-70641820 protein_coding
ENSMUSG00000085952 (Gm12315)
predicted gene 12315
ENSMUST00000151599 (Gm12315-001) 70623027-70625561 lincRNA
ENSMUSG00000087279 (4930544D05Rik)
RIKEN cDNA 4930544D05 gene
ENSMUST00000125387 (4930544D05Rik-001) 70615894-70616870 retained_intron
ENSMUST00000135865 (4930544D05Rik-002) 70615897-70616890 nonsense_mediated_decay
ENSMUST00000144960 (4930544D05Rik-003) 70615910-70616877 protein_coding
ENSMUST00000180052 (4930544D05Rik-004) 70615848-70616875 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004WF_0001ENSG00000108556ENST00000293780ENST00000572438ENST00000575637ENSG00000185245ENST00000329125ENST00000611961ENSG00000205710ENST00000381365ENST00000521575CIL_0004WF_0002ENSMUSG00000014609ENSMUST00000014753ENSMUST00000102556ENSMUST00000134836ENSMUST00000135920ENSMUSG00000050675ENSMUST00000055184ENSMUST00000108551ENSMUSG00000085952ENSMUST00000151599ENSMUSG00000087279ENSMUST00000125387ENSMUST00000135865ENSMUST00000144960ENSMUST00000180052
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004WF_0001ENSG00000108556ENST00000293780ENSG00000185245ENST00000329125ENST00000611961ENSG00000205710ENST00000381365CIL_0004WF_0002ENSMUSG00000014609ENSMUST00000014753ENSMUST00000102556ENSMUST00000134836ENSMUST00000135920ENSMUSG00000050675ENSMUST00000055184ENSMUST00000108551ENSMUSG00000085952ENSMUST00000151599ENSMUSG00000087279ENSMUST00000125387ENSMUST00000135865ENSMUST00000144960ENSMUST00000180052
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108556 ENST00000293780 N/A N/A N/A N/A N/A N/A N/A N/A 3.470±0.00 N/A N/A N/A N/A N/A
ENST00000572438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000185245 ENST00000329125 0.227±0.00 27.569±0.00 N/A 0.982±0.00 0.210±0.00 0.157±0.00 0.496±0.00 N/A 0.431±0.00 0.583±0.24 0.192±0.00 0.252±0.04 N/A 0.266±0.00
ENST00000611961 0.227±0.00 N/A 0.441±0.00 0.125±0.00 0.371±0.00 0.539±0.00 0.160±0.09 0.429±0.31 0.077±0.00 0.969±0.00 0.263±0.00 0.203±0.09 0.243±0.15 0.074±0.00
ENSG00000205710 ENST00000381365 N/A N/A N/A N/A N/A N/A N/A N/A 2.876±0.00 N/A N/A N/A N/A N/A
ENST00000521575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000014609 ENSMUST00000014753 N/A N/A N/A N/A N/A N/A N/A N/A 0.024±0.00 0.090±0.00 2.450±0.43 N/A 0.017±0.00 3.674±1.06
ENSMUST00000102556 0.062±0.01 N/A 0.064±0.04 N/A 0.949±0.77 N/A N/A 0.231±0.12 0.262±0.23 0.034±0.00 7.159±1.76 0.113±0.05 0.058±0.00 N/A
ENSMUST00000134836 0.095±0.03 0.084±0.00 0.150±0.09 N/A 0.271±0.00 0.099±0.00 N/A 0.206±0.04 0.130±0.11 0.189±0.04 N/A 0.207±0.13 0.068±0.04 61.031±11.99
ENSMUST00000135920 N/A 0.480±0.06 0.139±0.00 0.372±0.04 0.258±0.13 0.288±0.00 0.137±0.04 N/A N/A 0.258±0.01 N/A 0.253±0.08 0.066±0.00 62.085±22.23
ENSMUSG00000050675 ENSMUST00000055184 0.099±0.02 0.093±0.01 0.356±0.01 0.294±0.16 N/A 0.114±0.05 0.131±0.00 0.243±0.00 0.924±0.55 0.174±0.06 0.874±0.28 0.314±0.13 0.385±0.12 0.196±0.00
ENSMUST00000108551 0.021±0.00 0.116±0.09 0.075±0.00 0.065±0.00 N/A 0.094±0.03 0.162±0.00 0.060±0.00 1.087±0.97 0.458±0.19 0.297±0.00 0.207±0.12 0.228±0.15 0.134±0.08
ENSMUSG00000085952 ENSMUST00000151599 0.074±0.05 N/A N/A 0.009±0.00 N/A N/A N/A 0.279±0.20 0.401±0.29 N/A 0.056±0.01 0.115±0.09 0.031±0.01 0.043±0.00
ENSMUSG00000087279 ENSMUST00000125387 0.085±0.04 0.368±0.00 0.027±0.00 N/A 0.582±0.58 N/A N/A 0.119±0.05 0.139±0.11 0.159±0.05 1.578±0.18 0.469±0.33 N/A 15.272±0.00
ENSMUST00000135865 N/A N/A N/A 0.080±0.00 0.204±0.00 N/A N/A 0.104±0.00 0.033±0.00 0.060±0.00 N/A N/A N/A 12.378±0.00
ENSMUST00000144960 N/A N/A N/A 0.015±0.00 0.121±0.00 N/A N/A 0.112±0.05 N/A N/A N/A 0.181±0.05 0.011±0.00 136.708±40.39
ENSMUST00000180052 N/A N/A 0.065±0.00 N/A N/A N/A 0.109±0.06 0.059±0.03 0.011±0.00 0.102±0.01 0.929±0.05 N/A N/A 215.804±14.94

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