C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000P4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108556-ENSG00000108556 CGP 9606 17:4897774-4903074
GeneTranscriptPositionBiotype
ENSG00000108556 (CHRNE)
cholinergic receptor, nicotinic, epsilon (muscle) 		ENST00000293780 (CHRNE-001) 4897774-4903074 protein_coding
ENST00000572438 (CHRNE-002) 4898057-4901811 retained_intron
ENST00000575637 (CHRNE-003) 4901009-4902630 processed_transcript
ENSG00000141503 (MINK1)
misshapen-like kinase 1 		ENST00000347992 (MINK1-002) 4833400-4898054 protein_coding
ENST00000355280 (MINK1-001) 4833388-4898053 protein_coding
ENST00000453408 (MINK1-003) 4833584-4897287 protein_coding
ENST00000571207 (MINK1-006) 4884469-4898061 nonsense_mediated_decay
ENST00000571526 (MINK1-011) 4893196-4893871 retained_intron
ENST00000572304 (MINK1-012) 4893578-4894216 retained_intron
ENST00000572330 (MINK1-004) 4833399-4897805 retained_intron
ENST00000572629 (MINK1-010) 4892471-4893650 retained_intron
ENST00000574453 (MINK1-005) 4833413-4898053 nonsense_mediated_decay
ENST00000574871 (MINK1-008) 4894544-4898060 retained_intron
ENST00000575511 (MINK1-013) 4894858-4895789 retained_intron
ENST00000576037 (MINK1-014) 4896205-4897145 protein_coding
ENST00000577021 (MINK1-009) 4833621-4885965 nonsense_mediated_decay
ENSG00000205710 (C17orf107)
chromosome 17 open reading frame 107 		ENST00000381365 (C17orf107-001) 4899536-4902932 protein_coding
ENST00000521575 (C17orf107-002) 4899418-4900799 protein_coding
CIL_0000P4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000014609-ENSMUSG00000014609 CGP 10090 11:70614883-70619216
GeneTranscriptPositionBiotype
ENSMUSG00000014609 (Chrne)
cholinergic receptor, nicotinic, epsilon polypeptide 		ENSMUST00000014753 (Chrne-002) 70614883-70619216 protein_coding
ENSMUST00000102556 (Chrne-001) 70614883-70619194 protein_coding
ENSMUST00000134836 (Chrne-003) 70614893-70615697 retained_intron
ENSMUST00000135920 (Chrne-005) 70614885-70615673 retained_intron
ENSMUSG00000087279 (4930544D05Rik)
RIKEN cDNA 4930544D05 gene 		ENSMUST00000125387 (4930544D05Rik-001) 70615894-70616870 retained_intron
ENSMUST00000135865 (4930544D05Rik-002) 70615897-70616890 nonsense_mediated_decay
ENSMUST00000144960 (4930544D05Rik-003) 70615910-70616877 protein_coding
ENSMUST00000180052 (4930544D05Rik-004) 70615848-70616875 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000P4_0001ENSG00000108556ENST00000293780ENST00000572438ENST00000575637ENSG00000141503ENST00000347992ENST00000355280ENST00000453408ENST00000571207ENST00000571526ENST00000572304ENST00000572330ENST00000572629ENST00000574453ENST00000574871ENST00000575511ENST00000576037ENST00000577021ENSG00000205710ENST00000381365ENST00000521575CIL_0000P4_0002ENSMUSG00000014609ENSMUST00000014753ENSMUST00000102556ENSMUST00000134836ENSMUST00000135920ENSMUSG00000087279ENSMUST00000125387ENSMUST00000135865ENSMUST00000144960ENSMUST00000180052
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000P4_0001ENSG00000108556ENST00000293780ENSG00000141503ENST00000347992ENST00000355280ENST00000453408ENST00000572330ENST00000574453ENST00000575511ENST00000577021ENSG00000205710ENST00000381365CIL_0000P4_0002ENSMUSG00000014609ENSMUST00000014753ENSMUST00000102556ENSMUST00000134836ENSMUST00000135920ENSMUSG00000087279ENSMUST00000125387ENSMUST00000135865ENSMUST00000144960ENSMUST00000180052
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108556 ENST00000293780 N/A N/A N/A N/A N/A N/A N/A N/A 3.470±0.00 N/A N/A N/A N/A N/A
ENST00000572438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000141503 ENST00000347992 2.986±0.00 N/A N/A 19.773±15.92 N/A N/A 4.899±0.00 N/A N/A N/A 1.728±0.00 20.332±0.00 N/A N/A
ENST00000355280 10.633±0.00 N/A N/A N/A 9.812±0.00 7.394±3.65 2.160±0.00 9.125±0.00 4.311±0.00 12.358±0.00 N/A 13.567±8.38 15.542±2.26 5.266±0.00
ENST00000453408 4.987±0.00 N/A 1.187±0.00 19.738±0.00 4.645±0.85 3.346±1.01 2.339±0.00 4.391±3.04 1.620±0.00 6.423±3.37 0.632±0.00 13.465±9.51 8.134±0.00 N/A
ENST00000571207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572330 N/A N/A N/A N/A N/A N/A N/A 0.899±0.00 1.107±0.00 1.623±0.00 N/A N/A N/A 3.815±0.00
ENST00000572629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.822±0.00 N/A N/A
ENST00000574871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.711±0.00 N/A N/A N/A
ENST00000576037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577021 N/A N/A N/A 13.093±0.00 11.373±0.00 22.927±0.00 2.018±0.00 4.141±0.00 N/A 15.043±0.00 2.161±0.00 11.606±0.00 N/A N/A
ENSG00000205710 ENST00000381365 N/A N/A N/A N/A N/A N/A N/A N/A 2.876±0.00 N/A N/A N/A N/A N/A
ENST00000521575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000014609 ENSMUST00000014753 N/A N/A N/A N/A N/A N/A N/A N/A 0.024±0.00 0.090±0.00 2.450±0.43 N/A 0.017±0.00 3.674±1.06
ENSMUST00000102556 0.062±0.01 N/A 0.064±0.04 N/A 0.949±0.77 N/A N/A 0.231±0.12 0.262±0.23 0.034±0.00 7.159±1.76 0.113±0.05 0.058±0.00 N/A
ENSMUST00000134836 0.095±0.03 0.084±0.00 0.150±0.09 N/A 0.271±0.00 0.099±0.00 N/A 0.206±0.04 0.130±0.11 0.189±0.04 N/A 0.207±0.13 0.068±0.04 61.031±11.99
ENSMUST00000135920 N/A 0.480±0.06 0.139±0.00 0.372±0.04 0.258±0.13 0.288±0.00 0.137±0.04 N/A N/A 0.258±0.01 N/A 0.253±0.08 0.066±0.00 62.085±22.23
ENSMUSG00000087279 ENSMUST00000125387 0.085±0.04 0.368±0.00 0.027±0.00 N/A 0.582±0.58 N/A N/A 0.119±0.05 0.139±0.11 0.159±0.05 1.578±0.18 0.469±0.33 N/A 15.272±0.00
ENSMUST00000135865 N/A N/A N/A 0.080±0.00 0.204±0.00 N/A N/A 0.104±0.00 0.033±0.00 0.060±0.00 N/A N/A N/A 12.378±0.00
ENSMUST00000144960 N/A N/A N/A 0.015±0.00 0.121±0.00 N/A N/A 0.112±0.05 N/A N/A N/A 0.181±0.05 0.011±0.00 136.708±40.39
ENSMUST00000180052 N/A N/A 0.065±0.00 N/A N/A N/A 0.109±0.06 0.059±0.03 0.011±0.00 0.102±0.01 0.929±0.05 N/A N/A 215.804±14.94

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