C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: predicted gene 16039
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000089862 Gm16039 10090 + 6:8259288-8597480 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000159168 Gm16039-005 8270466-8428767 protein_coding
  ENSMUST00000159335 Gm16039-001 8259288-8459470 protein_coding
  ENSMUST00000159378 Gm16039-007 8259350-8427138 protein_coding
  ENSMUST00000159433 Gm16039-002 8259430-8428760 protein_coding
  ENSMUST00000160253 Gm16039-003 8419678-8428238 processed_transcript
  ENSMUST00000160705 Gm16039-008 8259428-8427279 protein_coding
  ENSMUST00000161400 Gm16039-006 8259444-8279552 processed_transcript
  ENSMUST00000162034 Gm16039-009 8259382-8428764 protein_coding
  ENSMUST00000162564 Gm16039-004 8259450-8597480 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000159168ENSMUST00000159378ENSMUST00000159433ENSMUST00000162034ENSMUST00000162564
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000159168 6.762±0.41 8.589±2.12 N/A N/A 7.061±1.53 10.821±2.25 3.369±0.92 7.780±1.71 8.367±2.43 7.045±0.11 N/A 7.592±2.50 2.800±1.35
ENSMUST00000159378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.883±0.00
ENSMUST00000159433 4.384±0.24 N/A 6.626±0.46 9.267±0.13 3.653±0.00 6.247±0.00 3.407±0.68 7.032±2.39 7.319±3.16 7.395±0.00 4.904±0.18 7.835±1.87 6.583±0.22
ENSMUST00000162034 N/A 4.587±0.00 N/A N/A N/A N/A N/A 2.887±0.00 3.445±0.89 N/A N/A N/A N/A
ENSMUST00000162564 N/A N/A N/A 3.686±0.35 N/A N/A N/A N/A 1.482±0.05 N/A 0.519±0.11 2.194±0.00 0.735±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002V7 CIL_0002V7_0002 CGP 6:8255936-8597480
CIL_0002V6 CIL_0002V6_0002 CGP 6:8259288-8597548

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076008 RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein_coding Danio_rerio
ENSG00000219545 RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein_coding Homo_sapiens

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