C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002V7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000106399-ENSG00000219545 CGP 9606 7:7636518-8004059
GeneTranscriptPositionBiotype
ENSG00000106399 (RPA3)
replication protein A3, 14kDa 		ENST00000223129 (RPA3-001) 7636518-7718607 protein_coding
ENST00000396682 (RPA3-003) 7636932-7640972 protein_coding
ENST00000401447 (RPA3-006) 7636975-7640026 protein_coding
ENST00000406109 (RPA3-004) 7636927-7640816 protein_coding
ENST00000462723 (RPA3-007) 7638414-7640577 retained_intron
ENST00000463632 (RPA3-008) 7638579-7640949 retained_intron
ENST00000483031 (RPA3-002) 7636985-7638406 retained_intron
ENSG00000106415 (GLCCI1)
glucocorticoid induced transcript 1 		ENST00000223145 (GLCCI1-001) 7968794-8089080 protein_coding
ENST00000414914 (GLCCI1-008) 7969687-8070955 protein_coding
ENST00000430798 (GLCCI1-009) 7969687-8071010 protein_coding
ENST00000438949 (GLCCI1-010) 8055507-8094272 nonsense_mediated_decay
ENST00000460897 (GLCCI1-006) 7969736-8004247 retained_intron
ENST00000470583 (GLCCI1-004) 7970441-8060232 processed_transcript
ENST00000474269 (GLCCI1-005) 7970452-8070948 processed_transcript
ENST00000482540 (GLCCI1-002) 8070075-8089077 retained_intron
ENST00000489405 (GLCCI1-003) 8003897-8086939 retained_intron
ENST00000491947 (GLCCI1-012) 8084639-8086240 retained_intron
ENST00000492797 (GLCCI1-007) 7969707-8022724 retained_intron
ENST00000496617 (GLCCI1-011) 8055732-8078742 processed_transcript
ENSG00000201747 (RNU6-534P)
RNA, U6 small nuclear 534, pseudogene 		ENST00000364877 (RNU6-534P-201) 7906519-7906624 snRNA
ENSG00000214998 (CCNB2P1)
CCNB2 pseudogene 1 		ENST00000399411 (CCNB2P1-001) 7909300-7910449 processed_pseudogene
ENSG00000219545 (RPA3OS)
UBAP1-MVB12-associated (UMA) domain containing 1 		ENST00000406829 (RPA3OS-001) 7772361-7879223 protein_coding
ENST00000463725 (RPA3OS-003) 7640752-7877443 processed_transcript
ENST00000468567 (RPA3OS-005) 7640763-8004059 processed_transcript
ENST00000469183 (RPA3OS-002) 7640752-8004053 processed_transcript
ENST00000471760 (RPA3OS-006) 7640784-7692508 processed_transcript
ENST00000482067 (RPA3OS-007) 7640794-7968020 processed_transcript
ENST00000493246 (RPA3OS-004) 7640711-7738822 processed_transcript
ENSG00000233264 (AC006042.8)
 ENST00000454684 (AC006042.8-001) 7980312-7982228 processed_pseudogene
ENSG00000234141 (AC009473.1)
 ENST00000451066 (AC009473.1-001) 7949853-7950709 antisense
ENSG00000270314 (GS1-165B14.2)
 ENST00000604734 (GS1-165B14.2-001) 7735743-7736851 processed_pseudogene
CIL_0002V7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000012483-ENSMUSG00000089862 CGP 10090 6:8255936-8597480
GeneTranscriptPositionBiotype
ENSMUSG00000012483 (Rpa3)
replication protein A3 		ENSMUST00000012627 (Rpa3-001) 8255936-8259173 protein_coding
ENSMUST00000159594 (Rpa3-002) 8257221-8259140 retained_intron
ENSMUSG00000029638 (Glcci1)
glucocorticoid induced transcript 1 		ENSMUST00000064285 (Glcci1-001) 8509600-8597548 protein_coding
ENSMUST00000161217 (Glcci1-007) 8520058-8593512 protein_coding
ENSMUST00000161494 (Glcci1-012) 8537816-8594071 protein_coding
ENSMUST00000162206 (Glcci1-010) 8579705-8591630 processed_transcript
ENSMUST00000162383 (Glcci1-009) 8511227-8579647 protein_coding
ENSMUST00000162567 (Glcci1-006) 8520020-8593621 protein_coding
ENSMUSG00000077250 (Gm26075)
predicted gene, 26075 		ENSMUST00000104062 (Gm26075-201) 8501236-8501356 snoRNA
ENSMUSG00000088118 (Gm24059)
predicted gene, 24059 		ENSMUST00000157493 (Gm24059-201) 8439353-8439664 misc_RNA
ENSMUSG00000089735 (Gm8428)
predicted gene 8428 		ENSMUST00000159919 (Gm8428-001) 8377596-8379379 processed_pseudogene
ENSMUSG00000089862 (Gm16039)
predicted gene 16039 		ENSMUST00000159168 (Gm16039-005) 8270466-8428767 protein_coding
ENSMUST00000159335 (Gm16039-001) 8259288-8459470 protein_coding
ENSMUST00000159378 (Gm16039-007) 8259350-8427138 protein_coding
ENSMUST00000159433 (Gm16039-002) 8259430-8428760 protein_coding
ENSMUST00000160253 (Gm16039-003) 8419678-8428238 processed_transcript
ENSMUST00000160705 (Gm16039-008) 8259428-8427279 protein_coding
ENSMUST00000161400 (Gm16039-006) 8259444-8279552 processed_transcript
ENSMUST00000162034 (Gm16039-009) 8259382-8428764 protein_coding
ENSMUST00000162564 (Gm16039-004) 8259450-8597480 nonsense_mediated_decay
ENSMUSG00000089890 (Gm16055)
predicted gene 16055 		ENSMUST00000161366 (Gm16055-001) 8354056-8364136 antisense
ENSMUSG00000090234 (Gm16042)
predicted gene 16042 		ENSMUST00000161905 (Gm16042-001) 8595743-8596989 transcribed_processed_pseudogene
ENSMUSG00000090407 (Gm16042)
predicted gene 16042 		ENSMUST00000169578 (Gm16042-001) 8595738-8596988 transcribed_processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002V7_0001ENSG00000106399ENST00000223129ENST00000396682ENST00000406109ENST00000483031ENSG00000106415ENST00000223145ENST00000482540ENST00000489405ENST00000496617ENSG00000201747ENST00000364877ENSG00000214998ENST00000399411ENSG00000219545ENST00000406829ENST00000469183ENSG00000233264ENST00000454684ENSG00000234141ENST00000451066ENSG00000270314ENST00000604734CIL_0002V7_0002ENSMUSG00000012483ENSMUST00000012627ENSMUST00000159594ENSMUSG00000029638ENSMUST00000064285ENSMUST00000161217ENSMUST00000161494ENSMUST00000162567ENSMUSG00000077250ENSMUST00000104062ENSMUSG00000088118ENSMUST00000157493ENSMUSG00000089735ENSMUST00000159919ENSMUSG00000089862ENSMUST00000159168ENSMUST00000159378ENSMUST00000159433ENSMUST00000162034ENSMUST00000162564ENSMUSG00000089890ENSMUST00000161366ENSMUSG00000090234ENSMUST00000161905ENSMUSG00000090407ENSMUST00000169578
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106399 ENST00000223129 N/A N/A N/A N/A N/A N/A N/A 2.856±0.00 N/A 2.428±0.00 N/A 4.700±0.66 1.943±0.00 N/A
ENST00000396682 6.307±0.00 14.046±0.00 N/A 12.333±0.00 N/A 5.603±0.00 5.176±0.00 11.811±1.82 13.353±0.00 9.505±0.00 N/A 12.115±2.26 8.134±0.96 22.243±0.00
ENST00000401447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000406109 9.033±0.00 16.852±0.00 N/A N/A N/A 8.366±0.00 7.819±0.00 14.577±0.00 N/A N/A 8.155±0.00 N/A 11.310±1.03 N/A
ENST00000462723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.176±0.00 N/A N/A N/A
ENSG00000106415 ENST00000223145 N/A 1.960±0.00 N/A 2.477±0.71 3.978±0.00 N/A 0.592±0.00 N/A 0.846±0.00 1.679±0.00 N/A 1.652±0.04 1.153±0.22 10.199±3.60
ENST00000414914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482540 N/A N/A 1.281±0.00 N/A 1.512±0.00 1.545±0.00 N/A 0.998±0.00 0.781±0.00 2.968±0.00 N/A 1.482±0.00 N/A N/A
ENST00000489405 N/A N/A N/A N/A N/A 4.012±0.00 N/A N/A N/A N/A 1.582±0.00 N/A N/A N/A
ENST00000491947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.711±0.00 N/A N/A N/A
ENSG00000201747 ENST00000364877 N/A 0.398±0.00 N/A 0.194±0.00 N/A N/A N/A 0.573±0.00 N/A N/A N/A N/A N/A 0.689±0.00
ENSG00000214998 ENST00000399411 N/A 0.088±0.00 0.239±0.00 N/A N/A 0.608±0.00 0.185±0.16 N/A 0.042±0.00 0.274±0.00 N/A 0.020±0.00 N/A 0.042±0.00
ENSG00000219545 ENST00000406829 2.279±0.00 3.163±0.00 2.077±0.00 N/A 4.095±0.00 2.546±0.00 2.861±0.00 6.405±0.00 2.562±1.00 3.336±0.00 0.569±0.00 4.240±0.84 3.131±0.82 3.520±0.00
ENST00000463725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.355±0.00 N/A N/A
ENST00000471760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000233264 ENST00000454684 0.115±0.00 0.385±0.00 0.462±0.00 0.217±0.15 0.158±0.00 0.587±0.00 0.018±0.00 N/A 0.599±0.00 0.906±0.77 N/A 0.134±0.07 0.446±0.40 0.479±0.40
ENSG00000234141 ENST00000451066 0.042±0.00 0.237±0.00 0.230±0.00 0.184±0.16 0.326±0.10 0.058±0.00 0.089±0.00 0.162±0.00 0.133±0.00 0.576±0.50 N/A 0.196±0.17 0.042±0.02 7.372±4.68
ENSG00000270314 ENST00000604734 N/A 0.009±0.00 0.318±0.00 0.264±0.00 0.023±0.01 0.281±0.00 0.108±0.09 0.036±0.00 0.048±0.04 0.270±0.24 N/A 0.043±0.03 N/A 0.054±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000012483 ENSMUST00000012627 2.969±0.88 0.424±0.13 12.247±2.09 13.379±4.32 1.366±0.90 1.427±1.00 2.686±0.39 2.212±0.58 23.211±25.42 2.112±0.59 3.755±0.77 11.344±10.89 41.138±25.71 2.221±1.24
ENSMUST00000159594 N/A 0.784±0.00 N/A 2.953±0.00 N/A 1.009±0.31 N/A 0.408±0.00 N/A N/A 0.537±0.18 1.621±0.82 N/A 0.281±0.01
ENSMUSG00000029638 ENSMUST00000064285 1.213±0.00 N/A 1.410±0.25 4.730±0.29 2.051±0.99 3.980±0.62 0.671±0.12 1.139±0.10 1.147±0.44 3.005±0.00 0.507±0.14 3.547±1.22 0.649±0.28 4.153±0.68
ENSMUST00000161217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.817±12.59
ENSMUST00000161494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.382±0.00 N/A N/A
ENSMUST00000162206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.908±2.39
ENSMUSG00000077250 ENSMUST00000104062 N/A N/A N/A 7.956±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088118 ENSMUST00000157493 0.231±0.00 N/A N/A 0.110±0.00 N/A N/A 0.216±0.00 N/A 0.066±0.00 0.394±0.00 N/A N/A 0.038±0.00 0.242±0.00
ENSMUSG00000089735 ENSMUST00000159919 0.129±0.08 0.211±0.13 0.081±0.01 0.014±0.00 0.206±0.10 0.220±0.15 0.059±0.04 0.137±0.06 0.061±0.03 0.384±0.06 0.025±0.00 0.256±0.19 0.073±0.04 0.162±0.13
ENSMUSG00000089862 ENSMUST00000159168 6.762±0.41 8.589±2.12 N/A N/A 7.061±1.53 10.821±2.25 3.369±0.92 7.780±1.71 8.367±2.43 7.045±0.11 N/A 7.592±2.50 2.800±1.35 N/A
ENSMUST00000159335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.883±0.00 N/A
ENSMUST00000159433 4.384±0.24 N/A 6.626±0.46 9.267±0.13 3.653±0.00 6.247±0.00 3.407±0.68 7.032±2.39 7.319±3.16 7.395±0.00 4.904±0.18 7.835±1.87 6.583±0.22 N/A
ENSMUST00000160253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162034 N/A 4.587±0.00 N/A N/A N/A N/A N/A 2.887±0.00 3.445±0.89 N/A N/A N/A N/A N/A
ENSMUST00000162564 N/A N/A N/A 3.686±0.35 N/A N/A N/A N/A 1.482±0.05 N/A 0.519±0.11 2.194±0.00 0.735±0.00 N/A
ENSMUSG00000089890 ENSMUST00000161366 N/A N/A 0.015±0.00 0.029±0.00 0.162±0.12 N/A N/A 0.157±0.04 0.092±0.07 0.076±0.00 N/A 0.170±0.11 0.071±0.07 0.067±0.00
ENSMUSG00000090234 ENSMUST00000161905 14.156±2.47 N/A 8.171±0.00 21.532±0.00 16.245±6.52 11.787±0.77 6.988±0.38 8.332±0.80 5.829±1.31 19.177±3.63 2.278±0.11 10.279±1.08 N/A 21.890±1.91
ENSMUSG00000090407 ENSMUST00000169578 6.983±0.00 7.761±0.54 7.198±0.00 22.717±3.86 8.760±0.00 9.865±0.15 6.183±0.00 8.213±0.51 7.432±0.00 19.721±0.00 N/A 8.672±0.45 3.586±0.32 N/A

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