C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002V6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000219545-ENSG00000106415 CGP 9606 7:7640711-8094272
GeneTranscriptPositionBiotype
ENSG00000106399 (RPA3)
replication protein A3, 14kDa 		ENST00000223129 (RPA3-001) 7636518-7718607 protein_coding
ENST00000396682 (RPA3-003) 7636932-7640972 protein_coding
ENST00000401447 (RPA3-006) 7636975-7640026 protein_coding
ENST00000406109 (RPA3-004) 7636927-7640816 protein_coding
ENST00000462723 (RPA3-007) 7638414-7640577 retained_intron
ENST00000463632 (RPA3-008) 7638579-7640949 retained_intron
ENST00000483031 (RPA3-002) 7636985-7638406 retained_intron
ENSG00000106415 (GLCCI1)
glucocorticoid induced transcript 1 		ENST00000223145 (GLCCI1-001) 7968794-8089080 protein_coding
ENST00000414914 (GLCCI1-008) 7969687-8070955 protein_coding
ENST00000430798 (GLCCI1-009) 7969687-8071010 protein_coding
ENST00000438949 (GLCCI1-010) 8055507-8094272 nonsense_mediated_decay
ENST00000460897 (GLCCI1-006) 7969736-8004247 retained_intron
ENST00000470583 (GLCCI1-004) 7970441-8060232 processed_transcript
ENST00000474269 (GLCCI1-005) 7970452-8070948 processed_transcript
ENST00000482540 (GLCCI1-002) 8070075-8089077 retained_intron
ENST00000489405 (GLCCI1-003) 8003897-8086939 retained_intron
ENST00000491947 (GLCCI1-012) 8084639-8086240 retained_intron
ENST00000492797 (GLCCI1-007) 7969707-8022724 retained_intron
ENST00000496617 (GLCCI1-011) 8055732-8078742 processed_transcript
ENSG00000201747 (RNU6-534P)
RNA, U6 small nuclear 534, pseudogene 		ENST00000364877 (RNU6-534P-201) 7906519-7906624 snRNA
ENSG00000214998 (CCNB2P1)
CCNB2 pseudogene 1 		ENST00000399411 (CCNB2P1-001) 7909300-7910449 processed_pseudogene
ENSG00000219545 (RPA3OS)
UBAP1-MVB12-associated (UMA) domain containing 1 		ENST00000406829 (RPA3OS-001) 7772361-7879223 protein_coding
ENST00000463725 (RPA3OS-003) 7640752-7877443 processed_transcript
ENST00000468567 (RPA3OS-005) 7640763-8004059 processed_transcript
ENST00000469183 (RPA3OS-002) 7640752-8004053 processed_transcript
ENST00000471760 (RPA3OS-006) 7640784-7692508 processed_transcript
ENST00000482067 (RPA3OS-007) 7640794-7968020 processed_transcript
ENST00000493246 (RPA3OS-004) 7640711-7738822 processed_transcript
ENSG00000233264 (AC006042.8)
 ENST00000454684 (AC006042.8-001) 7980312-7982228 processed_pseudogene
ENSG00000234141 (AC009473.1)
 ENST00000451066 (AC009473.1-001) 7949853-7950709 antisense
ENSG00000270314 (GS1-165B14.2)
 ENST00000604734 (GS1-165B14.2-001) 7735743-7736851 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0002V6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000089862-ENSMUSG00000029638 CGP 10090 6:8259288-8597548
GeneTranscriptPositionBiotype
ENSMUSG00000029638 (Glcci1)
glucocorticoid induced transcript 1 		ENSMUST00000064285 (Glcci1-001) 8509600-8597548 protein_coding
ENSMUST00000161217 (Glcci1-007) 8520058-8593512 protein_coding
ENSMUST00000161494 (Glcci1-012) 8537816-8594071 protein_coding
ENSMUST00000162206 (Glcci1-010) 8579705-8591630 processed_transcript
ENSMUST00000162383 (Glcci1-009) 8511227-8579647 protein_coding
ENSMUST00000162567 (Glcci1-006) 8520020-8593621 protein_coding
ENSMUSG00000077250 (Gm26075)
predicted gene, 26075 		ENSMUST00000104062 (Gm26075-201) 8501236-8501356 snoRNA
ENSMUSG00000088118 (Gm24059)
predicted gene, 24059 		ENSMUST00000157493 (Gm24059-201) 8439353-8439664 misc_RNA
ENSMUSG00000089735 (Gm8428)
predicted gene 8428 		ENSMUST00000159919 (Gm8428-001) 8377596-8379379 processed_pseudogene
ENSMUSG00000089862 (Gm16039)
predicted gene 16039 		ENSMUST00000159168 (Gm16039-005) 8270466-8428767 protein_coding
ENSMUST00000159335 (Gm16039-001) 8259288-8459470 protein_coding
ENSMUST00000159378 (Gm16039-007) 8259350-8427138 protein_coding
ENSMUST00000159433 (Gm16039-002) 8259430-8428760 protein_coding
ENSMUST00000160253 (Gm16039-003) 8419678-8428238 processed_transcript
ENSMUST00000160705 (Gm16039-008) 8259428-8427279 protein_coding
ENSMUST00000161400 (Gm16039-006) 8259444-8279552 processed_transcript
ENSMUST00000162034 (Gm16039-009) 8259382-8428764 protein_coding
ENSMUST00000162564 (Gm16039-004) 8259450-8597480 nonsense_mediated_decay
ENSMUSG00000089890 (Gm16055)
predicted gene 16055 		ENSMUST00000161366 (Gm16055-001) 8354056-8364136 antisense
ENSMUSG00000090234 (Gm16042)
predicted gene 16042 		ENSMUST00000161905 (Gm16042-001) 8595743-8596989 transcribed_processed_pseudogene
ENSMUSG00000090407 (Gm16042)
predicted gene 16042 		ENSMUST00000169578 (Gm16042-001) 8595738-8596988 transcribed_processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002V6_0001ENSG00000106399ENST00000223129ENST00000396682ENST00000406109ENST00000483031ENSG00000106415ENST00000223145ENST00000482540ENST00000489405ENST00000496617ENSG00000201747ENST00000364877ENSG00000214998ENST00000399411ENSG00000219545ENST00000406829ENST00000469183ENSG00000233264ENST00000454684ENSG00000234141ENST00000451066ENSG00000270314ENST00000604734CIL_0002V6_0002ENSMUSG00000029638ENSMUST00000064285ENSMUST00000161217ENSMUST00000161494ENSMUST00000162567ENSMUSG00000077250ENSMUST00000104062ENSMUSG00000088118ENSMUST00000157493ENSMUSG00000089735ENSMUST00000159919ENSMUSG00000089862ENSMUST00000159168ENSMUST00000159378ENSMUST00000159433ENSMUST00000162034ENSMUST00000162564ENSMUSG00000089890ENSMUST00000161366ENSMUSG00000090234ENSMUST00000161905ENSMUSG00000090407ENSMUST00000169578
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106399 ENST00000223129 N/A N/A N/A N/A N/A N/A N/A 2.856±0.00 N/A 2.428±0.00 N/A 4.700±0.66 1.943±0.00 N/A
ENST00000396682 6.307±0.00 14.046±0.00 N/A 12.333±0.00 N/A 5.603±0.00 5.176±0.00 11.811±1.82 13.353±0.00 9.505±0.00 N/A 12.115±2.26 8.134±0.96 22.243±0.00
ENST00000401447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000406109 9.033±0.00 16.852±0.00 N/A N/A N/A 8.366±0.00 7.819±0.00 14.577±0.00 N/A N/A 8.155±0.00 N/A 11.310±1.03 N/A
ENST00000462723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.176±0.00 N/A N/A N/A
ENSG00000106415 ENST00000223145 N/A 1.960±0.00 N/A 2.477±0.71 3.978±0.00 N/A 0.592±0.00 N/A 0.846±0.00 1.679±0.00 N/A 1.652±0.04 1.153±0.22 10.199±3.60
ENST00000414914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482540 N/A N/A 1.281±0.00 N/A 1.512±0.00 1.545±0.00 N/A 0.998±0.00 0.781±0.00 2.968±0.00 N/A 1.482±0.00 N/A N/A
ENST00000489405 N/A N/A N/A N/A N/A 4.012±0.00 N/A N/A N/A N/A 1.582±0.00 N/A N/A N/A
ENST00000491947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.711±0.00 N/A N/A N/A
ENSG00000201747 ENST00000364877 N/A 0.398±0.00 N/A 0.194±0.00 N/A N/A N/A 0.573±0.00 N/A N/A N/A N/A N/A 0.689±0.00
ENSG00000214998 ENST00000399411 N/A 0.088±0.00 0.239±0.00 N/A N/A 0.608±0.00 0.185±0.16 N/A 0.042±0.00 0.274±0.00 N/A 0.020±0.00 N/A 0.042±0.00
ENSG00000219545 ENST00000406829 2.279±0.00 3.163±0.00 2.077±0.00 N/A 4.095±0.00 2.546±0.00 2.861±0.00 6.405±0.00 2.562±1.00 3.336±0.00 0.569±0.00 4.240±0.84 3.131±0.82 3.520±0.00
ENST00000463725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.355±0.00 N/A N/A
ENST00000471760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000233264 ENST00000454684 0.115±0.00 0.385±0.00 0.462±0.00 0.217±0.15 0.158±0.00 0.587±0.00 0.018±0.00 N/A 0.599±0.00 0.906±0.77 N/A 0.134±0.07 0.446±0.40 0.479±0.40
ENSG00000234141 ENST00000451066 0.042±0.00 0.237±0.00 0.230±0.00 0.184±0.16 0.326±0.10 0.058±0.00 0.089±0.00 0.162±0.00 0.133±0.00 0.576±0.50 N/A 0.196±0.17 0.042±0.02 7.372±4.68
ENSG00000270314 ENST00000604734 N/A 0.009±0.00 0.318±0.00 0.264±0.00 0.023±0.01 0.281±0.00 0.108±0.09 0.036±0.00 0.048±0.04 0.270±0.24 N/A 0.043±0.03 N/A 0.054±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029638 ENSMUST00000064285 1.213±0.00 N/A 1.410±0.25 4.730±0.29 2.051±0.99 3.980±0.62 0.671±0.12 1.139±0.10 1.147±0.44 3.005±0.00 0.507±0.14 3.547±1.22 0.649±0.28 4.153±0.68
ENSMUST00000161217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.817±12.59
ENSMUST00000161494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.382±0.00 N/A N/A
ENSMUST00000162206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.908±2.39
ENSMUSG00000077250 ENSMUST00000104062 N/A N/A N/A 7.956±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088118 ENSMUST00000157493 0.231±0.00 N/A N/A 0.110±0.00 N/A N/A 0.216±0.00 N/A 0.066±0.00 0.394±0.00 N/A N/A 0.038±0.00 0.242±0.00
ENSMUSG00000089735 ENSMUST00000159919 0.129±0.08 0.211±0.13 0.081±0.01 0.014±0.00 0.206±0.10 0.220±0.15 0.059±0.04 0.137±0.06 0.061±0.03 0.384±0.06 0.025±0.00 0.256±0.19 0.073±0.04 0.162±0.13
ENSMUSG00000089862 ENSMUST00000159168 6.762±0.41 8.589±2.12 N/A N/A 7.061±1.53 10.821±2.25 3.369±0.92 7.780±1.71 8.367±2.43 7.045±0.11 N/A 7.592±2.50 2.800±1.35 N/A
ENSMUST00000159335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.883±0.00 N/A
ENSMUST00000159433 4.384±0.24 N/A 6.626±0.46 9.267±0.13 3.653±0.00 6.247±0.00 3.407±0.68 7.032±2.39 7.319±3.16 7.395±0.00 4.904±0.18 7.835±1.87 6.583±0.22 N/A
ENSMUST00000160253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162034 N/A 4.587±0.00 N/A N/A N/A N/A N/A 2.887±0.00 3.445±0.89 N/A N/A N/A N/A N/A
ENSMUST00000162564 N/A N/A N/A 3.686±0.35 N/A N/A N/A N/A 1.482±0.05 N/A 0.519±0.11 2.194±0.00 0.735±0.00 N/A
ENSMUSG00000089890 ENSMUST00000161366 N/A N/A 0.015±0.00 0.029±0.00 0.162±0.12 N/A N/A 0.157±0.04 0.092±0.07 0.076±0.00 N/A 0.170±0.11 0.071±0.07 0.067±0.00
ENSMUSG00000090234 ENSMUST00000161905 14.156±2.47 N/A 8.171±0.00 21.532±0.00 16.245±6.52 11.787±0.77 6.988±0.38 8.332±0.80 5.829±1.31 19.177±3.63 2.278±0.11 10.279±1.08 N/A 21.890±1.91
ENSMUSG00000090407 ENSMUST00000169578 6.983±0.00 7.761±0.54 7.198±0.00 22.717±3.86 8.760±0.00 9.865±0.15 6.183±0.00 8.213±0.51 7.432±0.00 19.721±0.00 N/A 8.672±0.45 3.586±0.32 N/A

Loading