C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type VI, alpha 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165165 Col6a5-201 ENSMUSG00000091345 10090 - 9:105858668-105960643 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000165165
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000165165 0.241±0.07 0.195±0.14 0.321±0.00 0.198±0.10 0.219±0.09 0.046±0.01 0.064±0.02 0.037±0.04 0.186±0.02 0.012±0.00 1.161±0.57 0.275±0.35 0.683±0.44

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005576 ISO extracellular region
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0007155 IEA cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265379 COL6A5-201 protein_coding Homo_sapiens 0 4804
ENST00000312481 COL6A5-001 nonsense_mediated_decay Homo_sapiens 0 4820
ENST00000373157 COL6A5-004 protein_coding Homo_sapiens 0 1107
ENST00000512482 COL6A5-002 protein_coding Homo_sapiens 0 876
ENST00000512836 COL6A5-003 protein_coding Homo_sapiens 0 1768

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