C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000TF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000068258-ENSDARG00000086385 CGP 7955 7:62028654-62361193
GeneTranscriptPositionBiotype
ENSDARG00000068258 (lrch4)
leucine-rich repeats and calponin homology (CH) domain containing 4 		ENSDART00000098622 (lrch4-201) 62028714-62123513 protein_coding
ENSDART00000148270 (lrch4-001) 62028654-62123519 protein_coding
ENSDARG00000086385 (LRCH4 (2 of 2))
leucine-rich repeats and calponin homology (CH) domain containing 4 		ENSDART00000122980 (LRCH4 (2 of 2)-201) 62324088-62361193 protein_coding
ENSDARG00000092829 (si:dkeyp-73c8.3)
si:dkeyp-73c8.3 		ENSDART00000132809 (si:dkeyp-73c8.3-003) 62043029-62050775 processed_transcript
ENSDART00000142082 (si:dkeyp-73c8.3-001) 62038668-62045875 processed_transcript
ENSDART00000146738 (si:dkeyp-73c8.3-002) 62039021-62045875 processed_transcript
CIL_0000TF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000093445-ENSMUSG00000029720 CGP 10090 5:137629121-137642899
GeneTranscriptPositionBiotype
ENSMUSG00000029720 (Gm20605)
predicted gene 20605 		ENSMUST00000177545 (Gm20605-001) 137629175-137642899 nonsense_mediated_decay
ENSMUSG00000079165 (Sap25)
sin3 associated polypeptide 		ENSMUST00000166099 (Sap25-001) 137641437-137642902 protein_coding
ENSMUST00000176075 (Sap25-004) 137642178-137642837 retained_intron
ENSMUST00000176256 (Sap25-006) 137641944-137642547 retained_intron
ENSMUST00000177038 (Sap25-005) 137642349-137642899 retained_intron
ENSMUST00000177354 (Sap25-003) 137641495-137642341 retained_intron
ENSMUST00000177466 (Sap25-002) 137641334-137642112 protein_coding
ENSMUSG00000093445 (Lrch4)
leucine-rich repeats and calponin homology (CH) domain containing 4 		ENSMUST00000031734 (Lrch4-001) 137629121-137641094 protein_coding
ENSMUST00000175968 (Lrch4-003) 137630130-137640180 protein_coding
ENSMUST00000176011 (Lrch4-007) 137629178-137633887 nonsense_mediated_decay
ENSMUST00000176667 (Lrch4-002) 137629178-137641099 protein_coding
ENSMUST00000176768 (Lrch4-008) 137639366-137640239 protein_coding
ENSMUST00000176871 (Lrch4-004) 137638320-137639363 protein_coding
ENSMUST00000176988 (Lrch4-005) 137629143-137636799 retained_intron
ENSMUST00000177477 (Lrch4-006) 137629152-137637614 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000TF_0001ENSDARG00000068258ENSDART00000098622ENSDART00000148270ENSDARG00000086385ENSDART00000122980ENSDARG00000092829ENSDART00000132809ENSDART00000142082ENSDART00000146738CIL_0000TF_0002ENSMUSG00000029720ENSMUST00000177545ENSMUSG00000079165ENSMUST00000166099ENSMUST00000176075ENSMUST00000176256ENSMUST00000177038ENSMUST00000177354ENSMUST00000177466ENSMUSG00000093445ENSMUST00000031734ENSMUST00000175968ENSMUST00000176011ENSMUST00000176667ENSMUST00000176768ENSMUST00000176871ENSMUST00000176988ENSMUST00000177477
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000TF_0001ENSDARG00000068258ENSDART00000098622ENSDART00000148270ENSDARG00000086385ENSDART00000122980ENSDARG00000092829ENSDART00000132809ENSDART00000146738CIL_0000TF_0002ENSMUSG00000029720ENSMUST00000177545ENSMUSG00000079165ENSMUST00000166099ENSMUSG00000093445ENSMUST00000031734ENSMUST00000175968ENSMUST00000176667ENSMUST00000176988
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000068258 ENSDART00000098622 N/A N/A N/A 0.879±0.43 N/A N/A 0.840±0.19 1.660±0.00 N/A N/A 0.406±0.00 N/A N/A N/A
ENSDART00000148270 N/A N/A N/A 0.250±0.13 N/A N/A 0.199±0.00 N/A 0.089±0.00 N/A 0.058±0.00 N/A N/A N/A
ENSDARG00000086385 ENSDART00000122980 N/A N/A N/A 0.784±0.13 N/A N/A 0.667±0.11 0.205±0.00 0.023±0.00 N/A 0.363±0.00 N/A N/A N/A
ENSDARG00000092829 ENSDART00000132809 N/A N/A N/A 0.477±0.29 N/A N/A 0.305±0.12 0.121±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000142082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000146738 N/A N/A N/A 0.381±0.26 N/A N/A 0.406±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029720 ENSMUST00000177545 14.222±2.73 14.600±1.26 17.015±2.15 5.908±1.73 30.236±10.24 22.837±4.14 4.611±1.19 8.435±2.12 4.546±2.67 31.565±3.34 5.027±0.88 15.563±3.62 2.820±1.21 6.898±2.67
ENSMUSG00000079165 ENSMUST00000166099 N/A N/A N/A N/A 27.341±12.75 N/A N/A 10.803±0.94 5.062±1.03 N/A N/A N/A N/A N/A
ENSMUST00000176075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000093445 ENSMUST00000031734 8.067±1.15 15.935±1.47 4.533±0.00 4.438±0.88 16.409±5.46 16.411±3.90 5.902±1.79 11.543±1.12 3.774±0.46 18.464±2.40 4.577±0.66 11.215±1.69 5.264±3.03 35.457±14.38
ENSMUST00000175968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.341±0.49
ENSMUST00000176011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176667 N/A N/A N/A N/A 31.393±1.44 N/A N/A N/A 8.341±1.38 N/A N/A N/A N/A N/A
ENSMUST00000176768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176988 N/A N/A N/A N/A N/A 37.616±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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