C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box helicase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000079785 DDX1 9606 + 2:15591178-15631111 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000233084 DDX1-201 15591621-15631109 protein_coding
  ENST00000381341 DDX1-001 15591178-15631111 protein_coding
  ENST00000434671 DDX1-002 15591483-15595177 protein_coding
  ENST00000459706 DDX1-003 15617305-15621387 retained_intron
  ENST00000470674 DDX1-005 15621092-15628736 retained_intron
  ENST00000478695 DDX1-004 15623533-15627557 retained_intron
  ENST00000617198 DDX1-202 15591851-15631100 protein_coding
  ENST00000621973 DDX1-203 15599153-15631109 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000233084ENST00000381341ENST00000617198ENST00000621973
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000233084 21.340±0.00 14.991±0.00 7.387±0.00 31.100±10.86 14.700±7.49 18.548±6.06 19.206±8.60 14.935±3.99 8.814±2.38 6.756±0.58 18.039±9.84 16.506±15.69 20.892±16.45 37.621±14.29
ENST00000381341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.118±0.00 N/A N/A
ENST00000617198 N/A N/A N/A 6.461±0.00 N/A N/A N/A N/A N/A N/A 9.004±0.00 8.563±0.00 N/A 8.023±0.00
ENST00000621973 10.508±0.00 15.592±0.00 N/A N/A 18.002±0.00 9.520±0.00 7.709±0.00 20.764±0.00 9.973±0.00 6.863±0.00 N/A 17.362±0.00 13.538±1.59 12.586±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001Z CIL_00001Z_0002 CGP 2:15166909-15631111
CIL_000020 CIL_000020_0002 CGP 2:15591178-15947007

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000245 NAS spliceosomal complex assembly
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0003712 IDA transcription cofactor activity
GO:0003724 TAS RNA helicase activity
GO:0003725 IEA double-stranded RNA binding
GO:0004518 IDA nuclease activity
GO:0004527 IEA exonuclease activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006200 IDA ATP catabolic process
GO:0006302 IDA double-strand break repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006388 IMP tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006446 NAS regulation of translational initiation
GO:0007275 IEP multicellular organismal development
GO:0008026 IDA ATP-dependent helicase activity
GO:0008143 IDA poly(A) binding
GO:0009615 IEA response to virus
GO:0010494 IDA cytoplasmic stress granule
GO:0016020 IDA membrane
GO:0030529 IDA ribonucleoprotein complex
GO:0032508 IDA DNA duplex unwinding
GO:0033677 IDA DNA/RNA helicase activity
GO:0043330 IEA response to exogenous dsRNA
GO:0044822 IDA poly(A) RNA binding
GO:0071920 IDA cleavage body
GO:0072669 IDA tRNA-splicing ligase complex
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032117 ddx1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 protein_coding Danio_rerio
ENSMUSG00000037149 Ddx1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 protein_coding Mus_musculus

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