C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box helicase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000233084 DDX1-201 ENSG00000079785 9606 + 2:15591621-15631109 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000233084
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000233084 21.340±0.00 14.991±0.00 7.387±0.00 31.100±10.86 14.700±7.49 18.548±6.06 19.206±8.60 14.935±3.99 8.814±2.38 6.756±0.58 18.039±9.84 16.506±15.69 20.892±16.45 37.621±14.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001Z CIL_00001Z_0002 CGP 2:15166909-15631111
CIL_000020 CIL_000020_0002 CGP 2:15591178-15947007

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000245 NAS spliceosomal complex assembly
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0003712 IDA transcription cofactor activity
GO:0003724 TAS RNA helicase activity
GO:0004518 IDA nuclease activity
GO:0004527 IEA exonuclease activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006200 IDA ATP catabolic process
GO:0006302 IDA double-strand break repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006388 IMP tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006446 NAS regulation of translational initiation
GO:0007275 IEP multicellular organismal development
GO:0008026 IDA ATP-dependent helicase activity
GO:0008143 IDA poly(A) binding
GO:0010494 IDA cytoplasmic stress granule
GO:0016020 IDA membrane
GO:0030529 IDA ribonucleoprotein complex
GO:0032508 IDA DNA duplex unwinding
GO:0033677 IDA DNA/RNA helicase activity
GO:0044822 IDA poly(A) RNA binding
GO:0071920 IDA cleavage body
GO:0072669 IDA tRNA-splicing ligase complex
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071103 Ddx1-201 protein_coding Mus_musculus 0 3020

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