Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Region Summary

CIL_000052_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSDARG00000042946-ENSDARG00000042953	CGP	7955	20:25515628-25552518
Gene	Transcript	Position	Biotype
ENSDARG00000042946 (hook1) hook homolog 1	ENSDART00000063052 (hook1-001)	25515628-25540078	protein_coding
ENSDARG00000042953 (cyp2n13) cytochrome P450, family 2, subfamily N, polypeptide 13	ENSDART00000063058 (cyp2n13-001)	25544866-25552518	protein_coding
ENSDARG00000094265 (si:dkey-183n20.15) si:dkey-183n20.15	ENSDART00000141340 (si:dkey-183n20.15-001)	25502663-25515991	protein_coding

CIL_000052_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000134709-ENSG00000134716	CGP	9606	1:59814786-59926790
Gene	Transcript	Position	Biotype
ENSG00000134709 (HOOK1) hook microtubule-tethering protein 1	ENST00000371208 (HOOK1-001)	59814861-59876378	protein_coding
	ENST00000455990 (HOOK1-003)	59814786-59835350	protein_coding
	ENST00000465876 (HOOK1-002)	59815172-59873007	processed_transcript
	ENST00000466803 (HOOK1-005)	59864639-59872978	processed_transcript
	ENST00000474695 (HOOK1-004)	59860283-59863868	processed_transcript
	ENST00000491135 (HOOK1-006)	59870877-59872982	processed_transcript
ENSG00000134716 (CYP2J2) cytochrome P450, family 2, subfamily J, polypeptide 2	ENST00000371204 (CYP2J2-001)	59893308-59926790	protein_coding
	ENST00000466095 (CYP2J2-003)	59893320-59926761	processed_transcript
	ENST00000468257 (CYP2J2-004)	59909911-59926755	processed_transcript
	ENST00000469406 (CYP2J2-005)	59893320-59926761	processed_transcript
	ENST00000492633 (CYP2J2-002)	59893316-59913238	processed_transcript

CIL_000052_0003 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000028572-ENSMUSG00000028571	CGP	10090	4:95967240-96077546
Gene	Transcript	Position	Biotype
ENSMUSG00000028571 (Cyp2j13) cytochrome P450, family 2, subfamily j, polypeptide 13	ENSMUST00000030305 (Cyp2j13-201)	96042660-96077540	protein_coding
	ENSMUST00000097973 (Cyp2j13-002)	96045231-96077524	protein_coding
	ENSMUST00000107078 (Cyp2j13-001)	96045231-96077546	protein_coding
	ENSMUST00000132513 (Cyp2j13-003)	96027534-96062029	protein_coding
ENSMUSG00000028572 (Hook1) hook homolog 1 (Drosophila)	ENSMUST00000030306 (Hook1-001)	95967240-96025413	protein_coding
	ENSMUST00000107083 (Hook1-002)	95967369-95999538	protein_coding
	ENSMUST00000124202 (Hook1-007)	96003620-96009918	processed_transcript
	ENSMUST00000125584 (Hook1-009)	96016184-96017677	processed_transcript
	ENSMUST00000125627 (Hook1-003)	95967363-96015480	processed_transcript
	ENSMUST00000140128 (Hook1-010)	96020011-96022231	processed_transcript
	ENSMUST00000141448 (Hook1-005)	95974386-96022342	processed_transcript
	ENSMUST00000143326 (Hook1-011)	96013293-96019627	processed_transcript
	ENSMUST00000146947 (Hook1-006)	96002446-96009525	processed_transcript
	ENSMUST00000148291 (Hook1-008)	96004335-96022484	processed_transcript
	ENSMUST00000156910 (Hook1-004)	96021241-96025391	processed_transcript
ENSMUSG00000083880 (Hspe1-ps6) heat shock protein 1 (chaperonin 10), pseudogene 6	ENSMUST00000120275 (Hspe1-ps6-001)	96072424-96072706	processed_pseudogene

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSDARG00000042946

ENSDART00000063052

N/A

2.173±0.26

N/A

0.277±0.00

0.631±0.00

0.115±0.00

N/A

0.320±0.00

N/A

ENSDARG00000042953

ENSDART00000063058

N/A

1.179±0.14

N/A

0.985±0.58

7.197±2.23

5.924±0.00

N/A

1.078±0.00

N/A

ENSDARG00000094265

ENSDART00000141340

N/A

0.641±0.00

N/A

4.275±0.00

N/A

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSG00000134709

ENST00000371208

0.006±0.00

0.246±0.00

N/A

1.319±0.32

0.349±0.00

N/A

4.717±0.00

0.433±0.18

1.115±0.00

N/A

0.937±0.53

0.637±0.00

3.891±2.06

ENST00000455990

N/A

ENST00000465876

N/A

0.785±0.00

N/A

0.426±0.00

N/A

24.428±12.92

ENST00000466803

N/A

ENST00000474695

0.167±0.00

N/A

ENST00000491135

N/A

ENSG00000134716

ENST00000371204

0.081±0.00

0.130±0.00

0.612±0.00

3.314±1.44

0.395±0.00

1.390±0.08

4.978±1.37

7.999±7.91

12.409±0.00

1.101±0.00

1.884±0.00

0.590±0.44

14.608±1.11

1.094±0.00

ENST00000466095

0.131±0.00

N/A

1.187±0.00

0.253±0.00

0.765±0.00

N/A

0.329±0.00

N/A

0.752±0.19

0.376±0.28

2.309±0.00

N/A

ENST00000468257

N/A

2.937±0.00

8.090±0.00

0.505±0.00

N/A

2.412±0.00

1.599±0.00

4.392±0.00

1.072±0.00

ENST00000469406

N/A

1.326±0.00

N/A

0.247±0.06

N/A

0.971±0.27

ENST00000492633

N/A

0.321±0.00

N/A

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSMUSG00000028571

ENSMUST00000030305

0.010±0.00

N/A

0.018±0.01

N/A

0.054±0.02

N/A

0.044±0.01

0.013±0.00

0.012±0.00

0.010±0.00

0.064±0.04

0.008±0.00

0.047±0.05

ENSMUST00000097973

N/A

0.028±0.00

N/A

0.071±0.00

N/A

0.148±0.05

N/A

0.095±0.02

N/A

0.092±0.06

ENSMUST00000107078

N/A

0.004±0.00

N/A

0.175±0.00

N/A

0.149±0.01

0.004±0.00

N/A

ENSMUST00000132513

N/A

0.049±0.03

N/A

0.289±0.00

N/A

0.049±0.00

0.133±0.00

0.007±0.00

N/A

ENSMUSG00000028572

ENSMUST00000030306

0.735±0.63

0.600±0.00

1.091±0.15

4.251±0.23

0.953±0.05

2.654±0.00

0.491±0.18

2.704±1.13

2.037±0.92

0.982±0.00

2.885±0.48

1.538±0.37

3.864±1.56

27.423±9.90

N/A

N/A

N/A

N/A

N/A

N/A

12.606±0.00

N/A

3.227±0.92

4.619±1.53

490.869±0.00

ENSMUST00000143326

N/A

451.048±0.00

ENSMUST00000146947

N/A

9.033±0.00

N/A

ENSMUST00000148291

N/A

42.785±0.00

N/A

16.545±0.00

15.678±5.15

386.833±0.00

ENSMUST00000156910

0.589±0.50

1.276±0.04

0.989±0.12

10.432±1.28

0.824±0.49

11.666±3.55

0.410±0.08

2.050±1.04

2.287±0.96

1.210±0.16

1.010±0.15

1.705±0.54

3.992±0.12

N/A

ENSMUSG00000083880

ENSMUST00000120275

N/A

4.569±0.00

N/A

0.283±0.00

N/A

3.158±0.00

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'RegionController' => '/var/www/c-it-loci/app/Controller/RegionController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Region' => '/var/www/c-it-loci/app/Model/Region.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`'
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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