C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00006J_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000038107-ENSDARG00000091042 CGP 7955 15:9468419-9514065
GeneTranscriptPositionBiotype
ENSDARG00000038107 (sgcg)
sarcoglycan, gamma 		ENSDART00000055555 (sgcg-201) 9468828-9495906 protein_coding
ENSDART00000144381 (sgcg-001) 9468419-9494863 protein_coding
ENSDARG00000091042 (SACS (2 of 2))
sacsin molecular chaperone 		ENSDART00000122117 (SACS (2 of 2)-201) 9512155-9514065 protein_coding
CIL_00006J_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000102683-ENSG00000151835 CGP 9606 13:23180952-23433728
GeneTranscriptPositionBiotype
ENSG00000102683 (SGCG)
sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein) 		ENST00000218867 (SGCG-001) 23180952-23325165 protein_coding
ENSG00000151835 (SACS)
sacsin molecular chaperone 		ENST00000382292 (SACS-001) 23328826-23411513 protein_coding
ENST00000382298 (SACS-201) 23328823-23433728 protein_coding
ENST00000402364 (SACS-003) 23328826-23375543 protein_coding
ENST00000423156 (SACS-005) 23328833-23355483 protein_coding
ENST00000455470 (SACS-004) 23328830-23368444 protein_coding
ENST00000476776 (SACS-002) 23353736-23354890 processed_transcript
ENSG00000229558 (SACS-AS1)
SACS antisense RNA 1 		ENST00000443092 (SACS-AS1-001) 23418971-23428869 lincRNA
ENSG00000232163 (RPLP1P13)
ribosomal protein, large, P1 pseudogene 13 		ENST00000434567 (RPLP1P13-001) 23373423-23374061 processed_pseudogene
ENSG00000235205 (TATDN2P3)
TatD DNase domain containing 2 pseudogene 3 		ENST00000452855 (TATDN2P3-001) 23243520-23247184 processed_pseudogene
ENSG00000236803 (SDAD1P4)
SDA1 domain containing 1 pseudogene 4 		ENST00000418445 (SDAD1P4-001) 23267506-23269150 processed_pseudogene
ENSG00000252952 (RNU6-58P)
RNA, U6 small nuclear 58, pseudogene 		ENST00000517143 (RNU6-58P-201) 23217432-23217534 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00006J_0001ENSDARG00000038107ENSDART00000055555ENSDART00000144381ENSDARG00000091042ENSDART00000122117CIL_00006J_0002ENSG00000102683ENST00000218867ENSG00000151835ENST00000382292ENST00000382298ENST00000402364ENST00000423156ENST00000455470ENST00000476776ENSG00000229558ENST00000443092ENSG00000232163ENST00000434567ENSG00000235205ENST00000452855ENSG00000236803ENST00000418445ENSG00000252952ENST00000517143
Region; Gene Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00006J_0001ENSDARG00000038107ENSDART00000055555ENSDART00000144381ENSDARG00000091042ENSDART00000122117CIL_00006J_0002ENSG00000102683ENST00000218867ENSG00000151835ENST00000382292ENST00000382298ENST00000402364ENST00000423156ENST00000455470ENST00000476776ENSG00000229558ENST00000443092ENSG00000232163ENST00000434567ENSG00000235205ENST00000452855ENSG00000236803ENST00000418445ENSG00000252952ENST00000517143
Gene Transcript Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000038107 ENSDART00000055555 N/A N/A N/A N/A N/A 6.330±0.82 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000144381 N/A N/A 3.147±1.65 N/A N/A 5.716±1.25 0.815±0.61 0.563±0.00 N/A 3.210±0.00 N/A N/A N/A
ENSDARG00000091042 ENSDART00000122117 N/A N/A 2.045±0.74 N/A N/A 0.112±0.00 N/A 0.026±0.00 N/A 0.078±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000102683 ENST00000218867 0.550±0.00 0.140±0.00 0.636±0.03 4.726±4.64 0.575±0.28 22.950±10.61 0.106±0.00 1.189±0.00 1.711±1.09 19.139±2.34 0.193±0.12 0.087±0.05 1.073±0.35
ENSG00000151835 ENST00000382292 N/A 0.200±0.00 3.163±0.00 N/A 0.580±0.40 0.304±0.00 N/A N/A 0.834±0.00 N/A 3.079±0.00 N/A 1.798±0.00
ENST00000382298 N/A N/A 2.979±1.44 0.322±0.13 N/A 0.173±0.00 N/A 1.472±0.00 N/A N/A N/A 0.029±0.00 0.496±0.00
ENST00000402364 0.456±0.00 0.987±0.00 1.024±0.00 0.186±0.00 0.716±0.00 N/A 0.414±0.13 0.138±0.00 0.576±0.00 1.708±0.00 0.989±0.11 0.116±0.05 0.974±0.53
ENST00000423156 N/A 1.584±0.00 N/A N/A N/A N/A 0.642±0.00 0.265±0.00 N/A N/A 2.115±0.00 0.272±0.00 N/A
ENST00000455470 N/A N/A N/A N/A N/A N/A N/A N/A 1.330±0.00 N/A N/A 0.301±0.00 N/A
ENST00000476776 N/A N/A N/A N/A N/A N/A 2.891±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000229558 ENST00000443092 N/A 0.024±0.00 0.045±0.01 0.168±0.00 0.176±0.11 0.011±0.00 N/A N/A N/A N/A 0.010±0.00 N/A 0.518±0.10
ENSG00000232163 ENST00000434567 N/A 0.074±0.00 0.257±0.00 0.079±0.00 N/A N/A 0.310±0.00 N/A 0.218±0.00 0.065±0.00 N/A N/A 0.222±0.08
ENSG00000235205 ENST00000452855 N/A N/A 0.027±0.01 0.040±0.01 0.012±0.00 0.409±0.02 N/A 0.072±0.00 0.020±0.00 0.223±0.05 N/A 0.025±0.00 0.097±0.02
ENSG00000236803 ENST00000418445 N/A N/A N/A N/A N/A 0.084±0.00 N/A N/A 0.178±0.00 0.153±0.00 N/A N/A N/A
ENSG00000252952 ENST00000517143 N/A N/A N/A N/A N/A 0.830±0.00 N/A N/A N/A N/A N/A N/A N/A

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