C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sacsin molecular chaperone
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000402364 SACS-003 ENSG00000151835 9606 - 13:23328826-23375543 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000402364
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000402364 0.456±0.00 0.987±0.00 1.024±0.00 0.186±0.00 0.716±0.00 0.414±0.13 0.138±0.00 0.576±0.00 1.708±0.00 0.989±0.11 0.116±0.05 0.974±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006J CIL_00006J_0002 CGP 13:23180952-23433728
CIL_0007ZO CIL_0007ZO_0001 VISTA 13:23315305-23916480
CIL_0008P8 CIL_0008P8_0001 VISTA 13:23315865-23916052

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006457 NAS protein folding
GO:0008219 IEA cell death
GO:0030424 TAS axon
GO:0030425 TAS dendrite
GO:0030544 IPI Hsp70 protein binding
GO:0051087 IDA chaperone binding
GO:0070628 IPI proteasome binding
GO:0070852 TAS cell body fiber
GO:0090084 IMP negative regulation of inclusion body assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119943 Sacs-005 protein_coding Mus_musculus 0 16450
ENSMUST00000150222 Sacs-004 retained_intron Mus_musculus 0 4416
ENSMUST00000188834 RP24-165K23.1-001 unprocessed_pseudogene Mus_musculus 0 2427
ENSMUST00000089394 Sacs-001 protein_coding Mus_musculus 0 2152
ENSMUST00000121091 Sacs-003 protein_coding Mus_musculus 0 2152
ENSMUST00000119509 Sacs-002 protein_coding Mus_musculus 0 2150

Loading