C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000218867 SGCG-001 ENSG00000102683 9606 + 13:23180952-23325165 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000218867
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000218867 0.550±0.00 0.140±0.00 0.636±0.03 4.726±4.64 0.575±0.28 22.950±10.61 0.106±0.00 1.189±0.00 1.711±1.09 19.139±2.34 0.193±0.12 0.087±0.05 1.073±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006J CIL_00006J_0002 CGP 13:23180952-23433728

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 TAS plasma membrane
GO:0007517 TAS muscle organ development
GO:0016011 IEA dystroglycan complex
GO:0016012 IEA sarcoglycan complex
GO:0016021 IEA integral component of membrane
GO:0042383 IEA sarcolemma

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121148 Sgcg-002 protein_coding Mus_musculus 0 787
ENSMUST00000077954 Sgcg-001 protein_coding Mus_musculus 0 787
ENSMUST00000129886 Sgcg-003 protein_coding Mus_musculus 0 252

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