C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sacsin molecular chaperone
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382298 SACS-201 ENSG00000151835 9606 - 13:23328823-23433728 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverPlacentaTestisENST00000382298
Transcript ID Brain Breast Heart Liver Placenta Testis
ENST00000382298 2.979±1.44 0.322±0.13 0.173±0.00 1.472±0.00 0.029±0.00 0.496±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006J CIL_00006J_0002 CGP 13:23180952-23433728
CIL_0007ZO CIL_0007ZO_0001 VISTA 13:23315305-23916480
CIL_0008P8 CIL_0008P8_0001 VISTA 13:23315865-23916052

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006457 NAS protein folding
GO:0008219 IEA cell death
GO:0030424 TAS axon
GO:0030425 TAS dendrite
GO:0030544 IPI Hsp70 protein binding
GO:0051087 IDA chaperone binding
GO:0070628 IPI proteasome binding
GO:0070852 TAS cell body fiber
GO:0090084 IMP negative regulation of inclusion body assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119943 Sacs-005 protein_coding Mus_musculus 0 16710
ENSMUST00000150222 Sacs-004 retained_intron Mus_musculus 0 4416
ENSMUST00000188834 RP24-165K23.1-001 unprocessed_pseudogene Mus_musculus 0 2527
ENSMUST00000089394 Sacs-001 protein_coding Mus_musculus 0 2420
ENSMUST00000119509 Sacs-002 protein_coding Mus_musculus 0 2418
ENSMUST00000121091 Sacs-003 protein_coding Mus_musculus 0 2401

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