C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000BY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000027159-ENSDARG00000007347 CGP 7955 13:354637-393703
GeneTranscriptPositionBiotype
ENSDARG00000007347 (degs1)
degenerative spermatocyte homolog 1, lipid desaturase (Drosophila) 		ENSDART00000013007 (degs1-001) 373956-386569 protein_coding
ENSDART00000127095 (degs1-201) 374148-393703 protein_coding
ENSDART00000137494 (degs1-002) 374045-382865 nonsense_mediated_decay
ENSDARG00000025605 (nvl)
nuclear VCP-like 		ENSDART00000038315 (nvl-001) 387984-404969 protein_coding
ENSDART00000136881 (nvl-002) 404891-425759 processed_transcript
ENSDARG00000027159 (fbxo28)
F-box protein 28 		ENSDART00000134884 (fbxo28-001) 354637-362295 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000BY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000143756-ENSG00000143753 CGP 9606 1:224114087-224193441
GeneTranscriptPositionBiotype
ENSG00000143753 (DEGS1)
delta(4)-desaturase, sphingolipid 1 		ENST00000323699 (DEGS1-001) 224183171-224193441 protein_coding
ENST00000391877 (DEGS1-201) 224183266-224193157 protein_coding
ENST00000415210 (DEGS1-004) 224175756-224192353 protein_coding
ENST00000465848 (DEGS1-003) 224183675-224190052 processed_transcript
ENST00000498813 (DEGS1-002) 224190136-224192440 processed_transcript
ENSG00000143756 (FBXO28)
F-box protein 28 		ENST00000366862 (FBXO28-001) 224114087-224162047 protein_coding
ENST00000424254 (FBXO28-003) 224114111-224158150 protein_coding
ENST00000483773 (FBXO28-002) 224114171-224134365 retained_intron
ENST00000519894 (FBXO28-004) 224114218-224131021 retained_intron
ENST00000523990 (FBXO28-005) 224114119-224158182 nonsense_mediated_decay
ENSG00000201898 (SNORA72)
Small nucleolar RNA SNORA72 		ENST00000365028 (SNORA72.1-202) 224179641-224179767 snoRNA
ENSG00000236773 (RP11-365O16.1)
 ENST00000415453 (RP11-365O16.1-001) 224175476-224175706 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000BY_0001ENSDARG00000007347ENSDART00000013007ENSDART00000127095ENSDART00000137494ENSDARG00000025605ENSDART00000038315ENSDART00000136881ENSDARG00000027159ENSDART00000134884CIL_0000BY_0002ENSG00000143753ENST00000323699ENST00000391877ENST00000415210ENST00000465848ENST00000498813ENSG00000143756ENST00000366862ENST00000424254ENST00000483773ENST00000519894ENST00000523990ENSG00000201898ENST00000365028ENSG00000236773ENST00000415453
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000BY_0001ENSDARG00000007347ENSDART00000013007ENSDART00000127095ENSDART00000137494ENSDARG00000025605ENSDART00000038315ENSDART00000136881ENSDARG00000027159ENSDART00000134884CIL_0000BY_0002ENSG00000143753ENST00000323699ENST00000391877ENST00000415210ENSG00000143756ENST00000366862ENST00000424254ENST00000523990ENSG00000201898ENST00000365028ENSG00000236773ENST00000415453
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000007347 ENSDART00000013007 N/A N/A N/A 18.016±12.79 N/A N/A 21.351±0.39 23.144±0.00 8.474±0.00 N/A 14.532±0.00 N/A N/A N/A
ENSDART00000127095 N/A N/A N/A N/A N/A N/A N/A N/A 4.832±0.00 N/A 6.536±0.00 N/A N/A N/A
ENSDART00000137494 N/A N/A N/A N/A N/A N/A N/A 3.093±2.44 N/A N/A N/A N/A N/A N/A
ENSDARG00000025605 ENSDART00000038315 N/A N/A N/A N/A N/A N/A 2.210±0.00 1.090±0.00 3.209±0.00 N/A 2.595±0.00 N/A N/A N/A
ENSDART00000136881 N/A N/A N/A N/A N/A N/A N/A 2.187±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000027159 ENSDART00000134884 N/A N/A N/A 7.001±0.00 N/A N/A 7.268±0.00 9.784±0.00 2.180±0.00 N/A 4.275±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000143753 ENST00000323699 15.696±0.00 19.286±0.00 1.607±0.00 11.199±6.66 10.769±7.84 6.911±6.19 6.109±4.64 16.793±0.00 4.770±1.40 9.408±6.58 2.969±0.00 8.461±5.48 49.653±32.71 11.798±0.00
ENST00000391877 8.258±0.00 5.997±0.00 N/A 5.689±3.34 8.300±3.55 4.936±1.63 5.853±0.00 2.425±1.04 3.669±1.62 8.694±5.10 2.345±0.14 4.683±0.62 28.360±7.00 6.704±0.25
ENST00000415210 N/A N/A 6.724±0.00 6.824±0.00 N/A 2.464±0.00 2.827±0.00 2.953±0.00 4.586±0.00 7.170±0.00 1.344±0.00 4.915±0.00 N/A N/A
ENST00000465848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000143756 ENST00000366862 4.105±0.00 2.971±0.00 2.029±0.00 4.845±0.60 1.986±0.30 3.209±0.87 2.991±1.03 3.192±0.08 3.316±1.21 2.945±2.03 4.085±0.00 3.538±1.83 2.797±0.07 3.591±1.94
ENST00000424254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.738±0.00 3.739±0.00 3.256±0.00 6.724±0.00
ENST00000483773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523990 N/A N/A N/A N/A 1.880±0.00 2.630±0.00 N/A N/A N/A N/A N/A 3.866±1.01 1.255±0.00 3.423±0.00
ENSG00000201898 ENST00000365028 N/A 0.254±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000236773 ENST00000415453 0.066±0.00 N/A N/A 0.071±0.00 N/A N/A N/A 0.070±0.00 N/A N/A N/A N/A N/A 0.108±0.00

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