C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: delta(4)-desaturase, sphingolipid 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000391877 DEGS1-201 ENSG00000143753 9606 + 1:224183266-224193157 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000391877
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000391877 8.258±0.00 5.997±0.00 5.689±3.34 8.300±3.55 4.936±1.63 5.853±0.00 2.425±1.04 3.669±1.62 8.694±5.10 2.345±0.14 4.683±0.62 28.360±7.00 6.704±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000BY CIL_0000BY_0002 CGP 1:224114087-224193441
CIL_0000BX CIL_0000BX_0002 CGP 1:224175756-224330387

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IEA mitochondrion
GO:0005783 TAS endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006629 IEA lipid metabolic process
GO:0006636 TAS unsaturated fatty acid biosynthetic process
GO:0006665 TAS sphingolipid metabolic process
GO:0009055 TAS electron carrier activity
GO:0016020 TAS membrane
GO:0016021 IEA integral component of membrane
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0030148 TAS:IEA sphingolipid biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035295 Degs1-001 protein_coding Mus_musculus 0 924
ENSMUST00000132551 Degs1-002 retained_intron Mus_musculus 0 806
ENSMUST00000133052 Degs1-003 protein_coding Mus_musculus 0 706
ENSMUST00000036819 9130409I23Rik-201 protein_coding Mus_musculus 0 693

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