C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lamin B receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005003 Lbr-201 ENSMUSG00000004880 10090 - 1:181815316-181842401 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005003
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005003 11.068±3.62 7.080±0.38 12.382±0.15 5.483±4.01 14.429±6.10 16.336±1.97 5.297±0.93 4.891±2.11 26.554±26.38 15.588±5.87 5.154±0.52 10.077±3.40 12.090±8.81 5.672±2.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R5 CIL_0007R5_0002 VISTA 1:181809962-182412053
CIL_0000BZ CIL_0000BZ_0003 CGP 1:181815316-182019980

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005635 IDA nuclear envelope
GO:0005637 TAS nuclear inner membrane
GO:0005652 TAS nuclear lamina
GO:0005739 IEA mitochondrion
GO:0016021 ISO integral component of membrane
GO:0016628 IEA oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor
GO:0031965 IEA nuclear membrane
GO:0044822 IEA poly(A) RNA binding
GO:0055114 IEA oxidation-reduction process
GO:0070087 IEA chromo shadow domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272163 LBR-001 protein_coding Homo_sapiens 0 1262
ENST00000338179 LBR-201 protein_coding Homo_sapiens 0 1256
ENST00000424022 LBR-007 retained_intron Homo_sapiens 0 355
ENST00000425080 LBR-002 protein_coding Homo_sapiens 0 303
ENST00000487054 LBR-005 processed_transcript Homo_sapiens 1e-26 124

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