| Source ID |
Type |
Tax ID |
Position |
| ENSDARG00000045067-ENSDARG00000075909 |
CGP |
7955 |
12:32369976-32420706  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0000C3_0001 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0000C3_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000C3_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSDARG00000045066' => 'ectonucleoside triphosphate diphosphohydrolase 1',
'ENSDARG00000045067' => 'potassium channel, subfamily K, member 1a',
'ENSDARG00000075909' => 'solute carrier family 35, member F3a',
'ENSG00000135750' => 'potassium channel, subfamily K, member 1',
'ENSG00000183780' => 'solute carrier family 35, member F3',
'ENSG00000225486' => null,
'ENSG00000231272' => null,
'ENSG00000232166' => null,
'ENSG00000233332' => null,
'ENSG00000236101' => 'ras-related C3 botulinum toxin substrate 1 pseudogene 7',
'ENSG00000236244' => null,
'ENSG00000264377' => 'microRNA 4671',
'ENSG00000265744' => 'microRNA 4427',
'ENSMUSG00000033998' => 'potassium channel, subfamily K, member 1',
'ENSMUSG00000057060' => 'solute carrier family 35, member F3'
),
'gene_name_arr' => array(
'ENSDARG00000045066' => 'entpd1',
'ENSDARG00000045067' => 'kcnk1a',
'ENSDARG00000075909' => 'slc35f3a',
'ENSG00000135750' => 'KCNK1',
'ENSG00000183780' => 'SLC35F3',
'ENSG00000225486' => 'RP11-301G21.1',
'ENSG00000231272' => 'RP4-799P18.4',
'ENSG00000232166' => 'RP4-799P18.5',
'ENSG00000233332' => 'RP4-799P18.2',
'ENSG00000236101' => 'RAC1P7',
'ENSG00000236244' => 'RP4-799P18.3',
'ENSG00000264377' => 'MIR4671',
'ENSG00000265744' => 'MIR4427',
'ENSMUSG00000033998' => 'Kcnk1',
'ENSMUSG00000057060' => 'Slc35f3'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 5 => 'Adrenal',
(int) 11 => 'Bladder',
(int) 16 => 'Brain',
(int) 31 => 'Breast',
(int) 40 => 'Colon',
(int) 45 => 'Heart',
(int) 52 => 'Kidney',
(int) 61 => 'Liver',
(int) 69 => 'Lung',
(int) 74 => 'Muscle',
(int) 83 => 'Ovary',
(int) 90 => 'Placenta',
(int) 95 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 30,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENSDART00000066257' => array(
'start' => '32404918',
'end' => '32425092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'entpd1-001'
),
'ENSDART00000126466' => array(
'start' => '32404919',
'end' => '32441661',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'entpd1-201'
),
'ENSDART00000148888' => array(
'start' => '32415065',
'end' => '32441864',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'entpd1-002'
),
'ENSDART00000066259' => array(
'start' => '32369976',
'end' => '32376232',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'kcnk1a-001'
),
'ENSDART00000122715' => array(
'start' => '32370404',
'end' => '32379565',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'kcnk1a-201'
),
'ENSDART00000133869' => array(
'start' => '32370279',
'end' => '32373246',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'kcnk1a-002'
),
'ENSDART00000109189' => array(
'start' => '32390545',
'end' => '32420695',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35f3a-201'
),
'ENSDART00000110773' => array(
'start' => '32390545',
'end' => '32420706',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'slc35f3a-002'
),
'ENSDART00000127616' => array(
'start' => '32387907',
'end' => '32401317',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35f3a-202'
),
'ENSDART00000153036' => array(
'start' => '32390433',
'end' => '32391074',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'slc35f3a-004'
),
'ENSDART00000153275' => array(
'start' => '32390546',
'end' => '32401317',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35f3a-001'
),
'ENSDART00000153291' => array(
'start' => '32387899',
'end' => '32391033',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35f3a-003'
),
'ENST00000366620' => array(
'start' => '233629607',
'end' => '233672238',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCNK1-002'
),
'ENST00000366621' => array(
'start' => '233614004',
'end' => '233672512',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCNK1-001'
),
'ENST00000446915' => array(
'start' => '233649941',
'end' => '233671491',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCNK1-006'
),
'ENST00000472190' => array(
'start' => '233629558',
'end' => '233671699',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCNK1-003'
),
'ENST00000472869' => array(
'start' => '233655695',
'end' => '233666686',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCNK1-005'
),
'ENST00000487728' => array(
'start' => '233636524',
'end' => '233666990',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCNK1-004'
),
'ENST00000366617' => array(
'start' => '234214271',
'end' => '234324511',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC35F3-002'
),
'ENST00000366618' => array(
'start' => '233904933',
'end' => '234324516',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC35F3-001'
),
'ENST00000453379' => array(
'start' => '233836080',
'end' => '233836432',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-301G21.1-001'
),
'ENST00000456078' => array(
'start' => '234261706',
'end' => '234274465',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP4-799P18.4-001'
),
'ENST00000412915' => array(
'start' => '234284972',
'end' => '234285541',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP4-799P18.5-001'
),
'ENST00000412483' => array(
'start' => '234212606',
'end' => '234215088',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-799P18.2-001'
),
'ENST00000445367' => array(
'start' => '234026851',
'end' => '234027227',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RAC1P7-001'
),
'ENST00000446433' => array(
'start' => '234268583',
'end' => '234272500',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-799P18.3-001'
),
'ENST00000583284' => array(
'start' => '234306467',
'end' => '234306539',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4671-201'
),
'ENST00000585213' => array(
'start' => '233624152',
'end' => '233624219',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4427-201'
),
'ENSMUST00000046765' => array(
'start' => '125995102',
'end' => '126030683',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kcnk1-201'
),
'ENSMUST00000108759' => array(
'start' => '126298558',
'end' => '126395482',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Slc35f3-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0000C3_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000C3_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0000C3_0002' => array(
'genes_in_region' => array(
'ENSG00000135750' => array(
[maximum depth reached]
),
'ENSG00000183780' => array(
[maximum depth reached]
),
'ENSG00000225486' => array(
[maximum depth reached]
),
'ENSG00000231272' => array(
[maximum depth reached]
),
'ENSG00000232166' => array(
[maximum depth reached]
),
'ENSG00000233332' => array(
[maximum depth reached]
),
'ENSG00000236244' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 3 => 'Bladder',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Heart',
(int) 19 => 'Liver',
(int) 20 => 'Ovary',
(int) 21 => 'Kidney',
(int) 22 => 'Adipose',
(int) 23 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Ovary',
(int) 36 => 'Testis',
(int) 37 => 'Adrenal',
(int) 38 => 'Brain',
(int) 39 => 'Breast',
(int) 40 => 'Liver',
(int) 41 => 'Muscle',
(int) 42 => 'Testis',
(int) 43 => 'Brain',
(int) 44 => 'Testis',
(int) 45 => 'Adipose',
(int) 46 => 'Brain',
(int) 47 => 'Breast',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Adrenal',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Kidney',
(int) 56 => 'Placenta',
(int) 57 => 'Brain'
)
),
'CIL_0000C3_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000033998' => array(
[maximum depth reached]
),
'ENSMUSG00000057060' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSDARG00000045066' => 'ectonucleoside triphosphate diphosphohydrolase 1',
'ENSDARG00000045067' => 'potassium channel, subfamily K, member 1a',
'ENSDARG00000075909' => 'solute carrier family 35, member F3a',
'ENSG00000135750' => 'potassium channel, subfamily K, member 1',
'ENSG00000183780' => 'solute carrier family 35, member F3',
'ENSG00000225486' => null,
'ENSG00000231272' => null,
'ENSG00000232166' => null,
'ENSG00000233332' => null,
'ENSG00000236101' => 'ras-related C3 botulinum toxin substrate 1 pseudogene 7',
'ENSG00000236244' => null,
'ENSG00000264377' => 'microRNA 4671',
'ENSG00000265744' => 'microRNA 4427',
'ENSMUSG00000033998' => 'potassium channel, subfamily K, member 1',
'ENSMUSG00000057060' => 'solute carrier family 35, member F3'
)
$gene_name_arr = array(
'ENSDARG00000045066' => 'entpd1',
'ENSDARG00000045067' => 'kcnk1a',
'ENSDARG00000075909' => 'slc35f3a',
'ENSG00000135750' => 'KCNK1',
'ENSG00000183780' => 'SLC35F3',
'ENSG00000225486' => 'RP11-301G21.1',
'ENSG00000231272' => 'RP4-799P18.4',
'ENSG00000232166' => 'RP4-799P18.5',
'ENSG00000233332' => 'RP4-799P18.2',
'ENSG00000236101' => 'RAC1P7',
'ENSG00000236244' => 'RP4-799P18.3',
'ENSG00000264377' => 'MIR4671',
'ENSG00000265744' => 'MIR4427',
'ENSMUSG00000033998' => 'Kcnk1',
'ENSMUSG00000057060' => 'Slc35f3'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000C3_0001',
'tax_id' => '7955',
'chromosome' => '12',
'seq_start' => '32369976',
'seq_end' => '32420706',
'region_length' => '50730',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000045067-ENSDARG00000075909'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000C3_0002',
'tax_id' => '9606',
'chromosome' => '1',
'seq_start' => '233614004',
'seq_end' => '234324516',
'region_length' => '710512',
'region_type' => 'CGP',
'el_id' => 'ENSG00000135750-ENSG00000183780'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000C3_0003',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '125995102',
'seq_end' => '126395482',
'region_length' => '400380',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000033998-ENSMUSG00000057060'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 5 => 'Adrenal',
(int) 11 => 'Bladder',
(int) 16 => 'Brain',
(int) 31 => 'Breast',
(int) 40 => 'Colon',
(int) 45 => 'Heart',
(int) 52 => 'Kidney',
(int) 61 => 'Liver',
(int) 69 => 'Lung',
(int) 74 => 'Muscle',
(int) 83 => 'Ovary',
(int) 90 => 'Placenta',
(int) 95 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 30
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENSDART00000066257' => array(
'start' => '32404918',
'end' => '32425092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'entpd1-001'
),
'ENSDART00000126466' => array(
'start' => '32404919',
'end' => '32441661',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'entpd1-201'
),
'ENSDART00000148888' => array(
'start' => '32415065',
'end' => '32441864',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'entpd1-002'
),
'ENSDART00000066259' => array(
'start' => '32369976',
'end' => '32376232',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'kcnk1a-001'
),
'ENSDART00000122715' => array(
'start' => '32370404',
'end' => '32379565',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'kcnk1a-201'
),
'ENSDART00000133869' => array(
'start' => '32370279',
'end' => '32373246',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'kcnk1a-002'
),
'ENSDART00000109189' => array(
'start' => '32390545',
'end' => '32420695',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35f3a-201'
),
'ENSDART00000110773' => array(
'start' => '32390545',
'end' => '32420706',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'slc35f3a-002'
),
'ENSDART00000127616' => array(
'start' => '32387907',
'end' => '32401317',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35f3a-202'
),
'ENSDART00000153036' => array(
'start' => '32390433',
'end' => '32391074',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'slc35f3a-004'
),
'ENSDART00000153275' => array(
'start' => '32390546',
'end' => '32401317',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35f3a-001'
),
'ENSDART00000153291' => array(
'start' => '32387899',
'end' => '32391033',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35f3a-003'
),
'ENST00000366620' => array(
'start' => '233629607',
'end' => '233672238',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCNK1-002'
),
'ENST00000366621' => array(
'start' => '233614004',
'end' => '233672512',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCNK1-001'
),
'ENST00000446915' => array(
'start' => '233649941',
'end' => '233671491',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCNK1-006'
),
'ENST00000472190' => array(
'start' => '233629558',
'end' => '233671699',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCNK1-003'
),
'ENST00000472869' => array(
'start' => '233655695',
'end' => '233666686',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCNK1-005'
),
'ENST00000487728' => array(
'start' => '233636524',
'end' => '233666990',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCNK1-004'
),
'ENST00000366617' => array(
'start' => '234214271',
'end' => '234324511',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC35F3-002'
),
'ENST00000366618' => array(
'start' => '233904933',
'end' => '234324516',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC35F3-001'
),
'ENST00000453379' => array(
'start' => '233836080',
'end' => '233836432',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-301G21.1-001'
),
'ENST00000456078' => array(
'start' => '234261706',
'end' => '234274465',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP4-799P18.4-001'
),
'ENST00000412915' => array(
'start' => '234284972',
'end' => '234285541',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP4-799P18.5-001'
),
'ENST00000412483' => array(
'start' => '234212606',
'end' => '234215088',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-799P18.2-001'
),
'ENST00000445367' => array(
'start' => '234026851',
'end' => '234027227',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RAC1P7-001'
),
'ENST00000446433' => array(
'start' => '234268583',
'end' => '234272500',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-799P18.3-001'
),
'ENST00000583284' => array(
'start' => '234306467',
'end' => '234306539',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4671-201'
),
'ENST00000585213' => array(
'start' => '233624152',
'end' => '233624219',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4427-201'
),
'ENSMUST00000046765' => array(
'start' => '125995102',
'end' => '126030683',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kcnk1-201'
),
'ENSMUST00000108759' => array(
'start' => '126298558',
'end' => '126395482',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Slc35f3-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0000C3_0002' => array(
'genes_in_region' => array(
'ENSG00000135750' => array(
[maximum depth reached]
),
'ENSG00000183780' => array(
[maximum depth reached]
),
'ENSG00000225486' => array(
[maximum depth reached]
),
'ENSG00000231272' => array(
[maximum depth reached]
),
'ENSG00000232166' => array(
[maximum depth reached]
),
'ENSG00000233332' => array(
[maximum depth reached]
),
'ENSG00000236244' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 3 => 'Bladder',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Heart',
(int) 19 => 'Liver',
(int) 20 => 'Ovary',
(int) 21 => 'Kidney',
(int) 22 => 'Adipose',
(int) 23 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Ovary',
(int) 36 => 'Testis',
(int) 37 => 'Adrenal',
(int) 38 => 'Brain',
(int) 39 => 'Breast',
(int) 40 => 'Liver',
(int) 41 => 'Muscle',
(int) 42 => 'Testis',
(int) 43 => 'Brain',
(int) 44 => 'Testis',
(int) 45 => 'Adipose',
(int) 46 => 'Brain',
(int) 47 => 'Breast',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Adrenal',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Kidney',
(int) 56 => 'Placenta',
(int) 57 => 'Brain'
)
),
'CIL_0000C3_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000033998' => array(
[maximum depth reached]
),
'ENSMUSG00000057060' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0000C3_0001',
'tax_id' => '7955',
'chromosome' => '12',
'seq_start' => '32369976',
'seq_end' => '32420706',
'region_length' => '50730',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000045067-ENSDARG00000075909'
)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0000C3_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000C3_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSDARG00000045066' => 'ectonucleoside triphosphate diphosphohydrolase 1',
'ENSDARG00000045067' => 'potassium channel, subfamily K, member 1a',
'ENSDARG00000075909' => 'solute carrier family 35, member F3a',
'ENSG00000135750' => 'potassium channel, subfamily K, member 1',
'ENSG00000183780' => 'solute carrier family 35, member F3',
'ENSG00000225486' => null,
'ENSG00000231272' => null,
'ENSG00000232166' => null,
'ENSG00000233332' => null,
'ENSG00000236101' => 'ras-related C3 botulinum toxin substrate 1 pseudogene 7',
'ENSG00000236244' => null,
'ENSG00000264377' => 'microRNA 4671',
'ENSG00000265744' => 'microRNA 4427',
'ENSMUSG00000033998' => 'potassium channel, subfamily K, member 1',
'ENSMUSG00000057060' => 'solute carrier family 35, member F3'
),
'gene_name_arr' => array(
'ENSDARG00000045066' => 'entpd1',
'ENSDARG00000045067' => 'kcnk1a',
'ENSDARG00000075909' => 'slc35f3a',
'ENSG00000135750' => 'KCNK1',
'ENSG00000183780' => 'SLC35F3',
'ENSG00000225486' => 'RP11-301G21.1',
'ENSG00000231272' => 'RP4-799P18.4',
'ENSG00000232166' => 'RP4-799P18.5',
'ENSG00000233332' => 'RP4-799P18.2',
'ENSG00000236101' => 'RAC1P7',
'ENSG00000236244' => 'RP4-799P18.3',
'ENSG00000264377' => 'MIR4671',
'ENSG00000265744' => 'MIR4427',
'ENSMUSG00000033998' => 'Kcnk1',
'ENSMUSG00000057060' => 'Slc35f3'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 5 => 'Adrenal',
(int) 11 => 'Bladder',
(int) 16 => 'Brain',
(int) 31 => 'Breast',
(int) 40 => 'Colon',
(int) 45 => 'Heart',
(int) 52 => 'Kidney',
(int) 61 => 'Liver',
(int) 69 => 'Lung',
(int) 74 => 'Muscle',
(int) 83 => 'Ovary',
(int) 90 => 'Placenta',
(int) 95 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 30,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENSDART00000066257' => array(
'start' => '32404918',
'end' => '32425092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'entpd1-001'
),
'ENSDART00000126466' => array(
'start' => '32404919',
'end' => '32441661',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'entpd1-201'
),
'ENSDART00000148888' => array(
'start' => '32415065',
'end' => '32441864',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'entpd1-002'
),
'ENSDART00000066259' => array(
'start' => '32369976',
'end' => '32376232',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'kcnk1a-001'
),
'ENSDART00000122715' => array(
'start' => '32370404',
'end' => '32379565',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'kcnk1a-201'
),
'ENSDART00000133869' => array(
'start' => '32370279',
'end' => '32373246',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'kcnk1a-002'
),
'ENSDART00000109189' => array(
'start' => '32390545',
'end' => '32420695',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35f3a-201'
),
'ENSDART00000110773' => array(
'start' => '32390545',
'end' => '32420706',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'slc35f3a-002'
),
'ENSDART00000127616' => array(
'start' => '32387907',
'end' => '32401317',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35f3a-202'
),
'ENSDART00000153036' => array(
'start' => '32390433',
'end' => '32391074',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'slc35f3a-004'
),
'ENSDART00000153275' => array(
'start' => '32390546',
'end' => '32401317',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35f3a-001'
),
'ENSDART00000153291' => array(
'start' => '32387899',
'end' => '32391033',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35f3a-003'
),
'ENST00000366620' => array(
'start' => '233629607',
'end' => '233672238',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCNK1-002'
),
'ENST00000366621' => array(
'start' => '233614004',
'end' => '233672512',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCNK1-001'
),
'ENST00000446915' => array(
'start' => '233649941',
'end' => '233671491',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCNK1-006'
),
'ENST00000472190' => array(
'start' => '233629558',
'end' => '233671699',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCNK1-003'
),
'ENST00000472869' => array(
'start' => '233655695',
'end' => '233666686',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCNK1-005'
),
'ENST00000487728' => array(
'start' => '233636524',
'end' => '233666990',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCNK1-004'
),
'ENST00000366617' => array(
'start' => '234214271',
'end' => '234324511',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC35F3-002'
),
'ENST00000366618' => array(
'start' => '233904933',
'end' => '234324516',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC35F3-001'
),
'ENST00000453379' => array(
'start' => '233836080',
'end' => '233836432',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-301G21.1-001'
),
'ENST00000456078' => array(
'start' => '234261706',
'end' => '234274465',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP4-799P18.4-001'
),
'ENST00000412915' => array(
'start' => '234284972',
'end' => '234285541',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP4-799P18.5-001'
),
'ENST00000412483' => array(
'start' => '234212606',
'end' => '234215088',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-799P18.2-001'
),
'ENST00000445367' => array(
'start' => '234026851',
'end' => '234027227',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RAC1P7-001'
),
'ENST00000446433' => array(
'start' => '234268583',
'end' => '234272500',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-799P18.3-001'
),
'ENST00000583284' => array(
'start' => '234306467',
'end' => '234306539',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4671-201'
),
'ENST00000585213' => array(
'start' => '233624152',
'end' => '233624219',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4427-201'
),
'ENSMUST00000046765' => array(
'start' => '125995102',
'end' => '126030683',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kcnk1-201'
),
'ENSMUST00000108759' => array(
'start' => '126298558',
'end' => '126395482',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Slc35f3-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0000C3_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000C3_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0000C3_0002' => array(
'genes_in_region' => array(
'ENSG00000135750' => array(
[maximum depth reached]
),
'ENSG00000183780' => array(
[maximum depth reached]
),
'ENSG00000225486' => array(
[maximum depth reached]
),
'ENSG00000231272' => array(
[maximum depth reached]
),
'ENSG00000232166' => array(
[maximum depth reached]
),
'ENSG00000233332' => array(
[maximum depth reached]
),
'ENSG00000236244' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 3 => 'Bladder',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Heart',
(int) 19 => 'Liver',
(int) 20 => 'Ovary',
(int) 21 => 'Kidney',
(int) 22 => 'Adipose',
(int) 23 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Ovary',
(int) 36 => 'Testis',
(int) 37 => 'Adrenal',
(int) 38 => 'Brain',
(int) 39 => 'Breast',
(int) 40 => 'Liver',
(int) 41 => 'Muscle',
(int) 42 => 'Testis',
(int) 43 => 'Brain',
(int) 44 => 'Testis',
(int) 45 => 'Adipose',
(int) 46 => 'Brain',
(int) 47 => 'Breast',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Adrenal',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Kidney',
(int) 56 => 'Placenta',
(int) 57 => 'Brain'
)
),
'CIL_0000C3_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000033998' => array(
[maximum depth reached]
),
'ENSMUSG00000057060' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSDARG00000045066' => 'ectonucleoside triphosphate diphosphohydrolase 1',
'ENSDARG00000045067' => 'potassium channel, subfamily K, member 1a',
'ENSDARG00000075909' => 'solute carrier family 35, member F3a',
'ENSG00000135750' => 'potassium channel, subfamily K, member 1',
'ENSG00000183780' => 'solute carrier family 35, member F3',
'ENSG00000225486' => null,
'ENSG00000231272' => null,
'ENSG00000232166' => null,
'ENSG00000233332' => null,
'ENSG00000236101' => 'ras-related C3 botulinum toxin substrate 1 pseudogene 7',
'ENSG00000236244' => null,
'ENSG00000264377' => 'microRNA 4671',
'ENSG00000265744' => 'microRNA 4427',
'ENSMUSG00000033998' => 'potassium channel, subfamily K, member 1',
'ENSMUSG00000057060' => 'solute carrier family 35, member F3'
)
$gene_name_arr = array(
'ENSDARG00000045066' => 'entpd1',
'ENSDARG00000045067' => 'kcnk1a',
'ENSDARG00000075909' => 'slc35f3a',
'ENSG00000135750' => 'KCNK1',
'ENSG00000183780' => 'SLC35F3',
'ENSG00000225486' => 'RP11-301G21.1',
'ENSG00000231272' => 'RP4-799P18.4',
'ENSG00000232166' => 'RP4-799P18.5',
'ENSG00000233332' => 'RP4-799P18.2',
'ENSG00000236101' => 'RAC1P7',
'ENSG00000236244' => 'RP4-799P18.3',
'ENSG00000264377' => 'MIR4671',
'ENSG00000265744' => 'MIR4427',
'ENSMUSG00000033998' => 'Kcnk1',
'ENSMUSG00000057060' => 'Slc35f3'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000C3_0001',
'tax_id' => '7955',
'chromosome' => '12',
'seq_start' => '32369976',
'seq_end' => '32420706',
'region_length' => '50730',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000045067-ENSDARG00000075909'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000C3_0002',
'tax_id' => '9606',
'chromosome' => '1',
'seq_start' => '233614004',
'seq_end' => '234324516',
'region_length' => '710512',
'region_type' => 'CGP',
'el_id' => 'ENSG00000135750-ENSG00000183780'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000C3_0003',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '125995102',
'seq_end' => '126395482',
'region_length' => '400380',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000033998-ENSMUSG00000057060'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 5 => 'Adrenal',
(int) 11 => 'Bladder',
(int) 16 => 'Brain',
(int) 31 => 'Breast',
(int) 40 => 'Colon',
(int) 45 => 'Heart',
(int) 52 => 'Kidney',
(int) 61 => 'Liver',
(int) 69 => 'Lung',
(int) 74 => 'Muscle',
(int) 83 => 'Ovary',
(int) 90 => 'Placenta',
(int) 95 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 30
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENSDART00000066257' => array(
'start' => '32404918',
'end' => '32425092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'entpd1-001'
),
'ENSDART00000126466' => array(
'start' => '32404919',
'end' => '32441661',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'entpd1-201'
),
'ENSDART00000148888' => array(
'start' => '32415065',
'end' => '32441864',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'entpd1-002'
),
'ENSDART00000066259' => array(
'start' => '32369976',
'end' => '32376232',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'kcnk1a-001'
),
'ENSDART00000122715' => array(
'start' => '32370404',
'end' => '32379565',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'kcnk1a-201'
),
'ENSDART00000133869' => array(
'start' => '32370279',
'end' => '32373246',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'kcnk1a-002'
),
'ENSDART00000109189' => array(
'start' => '32390545',
'end' => '32420695',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35f3a-201'
),
'ENSDART00000110773' => array(
'start' => '32390545',
'end' => '32420706',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'slc35f3a-002'
),
'ENSDART00000127616' => array(
'start' => '32387907',
'end' => '32401317',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35f3a-202'
),
'ENSDART00000153036' => array(
'start' => '32390433',
'end' => '32391074',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'slc35f3a-004'
),
'ENSDART00000153275' => array(
'start' => '32390546',
'end' => '32401317',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35f3a-001'
),
'ENSDART00000153291' => array(
'start' => '32387899',
'end' => '32391033',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'slc35f3a-003'
),
'ENST00000366620' => array(
'start' => '233629607',
'end' => '233672238',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCNK1-002'
),
'ENST00000366621' => array(
'start' => '233614004',
'end' => '233672512',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCNK1-001'
),
'ENST00000446915' => array(
'start' => '233649941',
'end' => '233671491',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'KCNK1-006'
),
'ENST00000472190' => array(
'start' => '233629558',
'end' => '233671699',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCNK1-003'
),
'ENST00000472869' => array(
'start' => '233655695',
'end' => '233666686',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCNK1-005'
),
'ENST00000487728' => array(
'start' => '233636524',
'end' => '233666990',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'KCNK1-004'
),
'ENST00000366617' => array(
'start' => '234214271',
'end' => '234324511',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC35F3-002'
),
'ENST00000366618' => array(
'start' => '233904933',
'end' => '234324516',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SLC35F3-001'
),
'ENST00000453379' => array(
'start' => '233836080',
'end' => '233836432',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-301G21.1-001'
),
'ENST00000456078' => array(
'start' => '234261706',
'end' => '234274465',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP4-799P18.4-001'
),
'ENST00000412915' => array(
'start' => '234284972',
'end' => '234285541',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP4-799P18.5-001'
),
'ENST00000412483' => array(
'start' => '234212606',
'end' => '234215088',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-799P18.2-001'
),
'ENST00000445367' => array(
'start' => '234026851',
'end' => '234027227',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RAC1P7-001'
),
'ENST00000446433' => array(
'start' => '234268583',
'end' => '234272500',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP4-799P18.3-001'
),
'ENST00000583284' => array(
'start' => '234306467',
'end' => '234306539',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4671-201'
),
'ENST00000585213' => array(
'start' => '233624152',
'end' => '233624219',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR4427-201'
),
'ENSMUST00000046765' => array(
'start' => '125995102',
'end' => '126030683',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Kcnk1-201'
),
'ENSMUST00000108759' => array(
'start' => '126298558',
'end' => '126395482',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Slc35f3-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0000C3_0002' => array(
'genes_in_region' => array(
'ENSG00000135750' => array(
[maximum depth reached]
),
'ENSG00000183780' => array(
[maximum depth reached]
),
'ENSG00000225486' => array(
[maximum depth reached]
),
'ENSG00000231272' => array(
[maximum depth reached]
),
'ENSG00000232166' => array(
[maximum depth reached]
),
'ENSG00000233332' => array(
[maximum depth reached]
),
'ENSG00000236244' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 3 => 'Bladder',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Heart',
(int) 19 => 'Liver',
(int) 20 => 'Ovary',
(int) 21 => 'Kidney',
(int) 22 => 'Adipose',
(int) 23 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Ovary',
(int) 36 => 'Testis',
(int) 37 => 'Adrenal',
(int) 38 => 'Brain',
(int) 39 => 'Breast',
(int) 40 => 'Liver',
(int) 41 => 'Muscle',
(int) 42 => 'Testis',
(int) 43 => 'Brain',
(int) 44 => 'Testis',
(int) 45 => 'Adipose',
(int) 46 => 'Brain',
(int) 47 => 'Breast',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Adrenal',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Kidney',
(int) 56 => 'Placenta',
(int) 57 => 'Brain'
)
),
'CIL_0000C3_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000033998' => array(
[maximum depth reached]
),
'ENSMUSG00000057060' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0000C3_0001',
'tax_id' => '7955',
'chromosome' => '12',
'seq_start' => '32369976',
'seq_end' => '32420706',
'region_length' => '50730',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000045067-ENSDARG00000075909'
)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(KCNK1)