C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000IB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000186074-ENSG00000109062 CGP 9606 17:74694311-74769353
GeneTranscriptPositionBiotype
ENSG00000109062 (SLC9A3R1)
solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1 		ENST00000262613 (SLC9A3R1-001) 74748652-74769353 protein_coding
ENST00000413388 (SLC9A3R1-002) 74762003-74769296 protein_coding
ENST00000578958 (SLC9A3R1-004) 74763030-74768559 retained_intron
ENST00000581356 (SLC9A3R1-005) 74763428-74768803 nonsense_mediated_decay
ENST00000583369 (SLC9A3R1-006) 74748652-74768582 protein_coding
ENSG00000186074 (CD300LF)
CD300 molecule-like family member f 		ENST00000301573 (CD300LF-007) 74694318-74712954 protein_coding
ENST00000326165 (CD300LF-001) 74694317-74712978 protein_coding
ENST00000343125 (CD300LF-201) 74694311-74705255 protein_coding
ENST00000361254 (CD300LF-202) 74694311-74705255 protein_coding
ENST00000462044 (CD300LF-004) 74695037-74705310 nonsense_mediated_decay
ENST00000464910 (CD300LF-003) 74695037-74705310 protein_coding
ENST00000469092 (CD300LF-002) 74694317-74712978 protein_coding
ENST00000581500 (CD300LF-005) 74695753-74705255 protein_coding
ENST00000583544 (CD300LF-008) 74704352-74712925 retained_intron
ENST00000583937 (CD300LF-006) 74694814-74712941 protein_coding

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0000IB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000047798-ENSMUSG00000020733 CGP 10090 11:115116214-115181181
GeneTranscriptPositionBiotype
ENSMUSG00000020732 (Rab37)
RAB37, member RAS oncogene family 		ENSMUST00000021076 (Rab37-003) 115154157-115162236 protein_coding
ENSMUST00000067754 (Rab37-001) 115091431-115162236 protein_coding
ENSMUST00000131046 (Rab37-002) 115091431-115148647 retained_intron
ENSMUST00000156383 (Rab37-004) 115154203-115157549 retained_intron
ENSMUSG00000020733 (Slc9a3r1)
solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1 		ENSMUST00000021077 (Slc9a3r1-001) 115163341-115181181 protein_coding
ENSMUSG00000047798 (Cd300lf)
CD300 antigen like family member F 		ENSMUST00000051264 (Cd300lf-003) 115116214-115133992 protein_coding
ENSMUST00000106561 (Cd300lf-001) 115116214-115133992 protein_coding
ENSMUST00000106562 (Cd300lf-004) 115116214-115133992 protein_coding
ENSMUST00000124083 (Cd300lf-005) 115120261-115126850 processed_transcript
ENSMUST00000127927 (Cd300lf-006) 115120345-115126797 processed_transcript
ENSMUST00000146254 (Cd300lf-002) 115118848-115133991 processed_transcript
ENSMUST00000149335 (Cd300lf-007) 115120357-115126791 processed_transcript

Mus musculus Ensembl (GRCm38)

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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000IB_0001ENSG00000109062ENST00000262613ENST00000413388ENST00000578958ENST00000581356ENST00000583369ENSG00000186074ENST00000301573ENST00000326165ENST00000343125ENST00000361254ENST00000462044ENST00000464910ENST00000469092ENST00000581500ENST00000583544ENST00000583937CIL_0000IB_0002ENSMUSG00000020732ENSMUST00000021076ENSMUST00000067754ENSMUST00000131046ENSMUST00000156383ENSMUSG00000020733ENSMUST00000021077ENSMUSG00000047798ENSMUST00000051264ENSMUST00000106561ENSMUST00000106562ENSMUST00000124083ENSMUST00000127927ENSMUST00000146254ENSMUST00000149335
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000IB_0001ENSG00000109062ENST00000262613ENST00000413388ENST00000578958ENST00000581356ENST00000583369ENSG00000186074ENST00000301573ENST00000326165ENST00000343125ENST00000361254ENST00000462044ENST00000464910ENST00000469092ENST00000581500ENST00000583544ENST00000583937CIL_0000IB_0002ENSMUSG00000020732ENSMUST00000021076ENSMUST00000067754ENSMUST00000131046ENSMUST00000156383ENSMUSG00000020733ENSMUST00000021077ENSMUSG00000047798ENSMUST00000051264ENSMUST00000106561ENSMUST00000106562ENSMUST00000146254
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109062 ENST00000262613 9.392±0.00 14.867±0.00 14.357±0.00 37.917±34.61 16.292±14.61 6.366±1.30 1.462±1.04 66.854±44.03 48.998±47.83 21.227±0.00 N/A 17.422±10.98 32.550±11.82 17.232±9.95
ENST00000413388 5.852±0.00 N/A N/A 5.142±0.00 1.301±0.00 3.607±1.04 0.872±0.37 N/A N/A 3.973±0.00 1.376±0.00 15.393±15.79 6.312±0.00 14.275±2.85
ENST00000578958 N/A N/A N/A N/A N/A N/A 0.837±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000581356 N/A N/A N/A 7.993±0.00 1.875±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583369 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.572±0.00 0.870±0.00 N/A N/A N/A
ENSG00000186074 ENST00000301573 N/A 0.251±0.00 N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A 0.335±0.00 0.190±0.00 N/A
ENST00000326165 N/A N/A N/A 0.467±0.00 0.130±0.00 0.182±0.00 N/A N/A 0.177±0.00 1.812±0.00 N/A 0.228±0.01 0.581±0.18 0.107±0.00
ENST00000343125 0.245±0.00 0.671±0.00 N/A N/A 0.335±0.00 0.517±0.00 0.080±0.00 N/A 0.093±0.00 1.059±0.00 N/A 0.412±0.21 0.179±0.00 N/A
ENST00000361254 N/A 0.307±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.480±0.27 0.143±0.00 0.165±0.13
ENST00000462044 N/A N/A N/A N/A N/A N/A N/A N/A 0.062±0.00 0.954±0.00 N/A N/A N/A N/A
ENST00000464910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.00
ENST00000469092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.108±0.00 N/A N/A
ENST00000581500 N/A N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583544 N/A N/A N/A 0.247±0.00 0.617±0.00 N/A N/A N/A 0.095±0.00 N/A N/A N/A N/A N/A
ENST00000583937 N/A N/A 0.091±0.00 N/A 0.089±0.00 N/A N/A N/A N/A N/A N/A N/A 0.247±0.06 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020732 ENSMUST00000021076 0.515±0.02 0.171±0.06 0.324±0.03 0.864±0.81 2.237±0.59 2.053±0.31 0.405±0.16 0.397±0.18 0.886±0.77 0.540±0.11 0.128±0.10 1.241±0.41 0.236±0.18 0.035±0.02
ENSMUST00000067754 N/A 0.109±0.05 N/A 0.453±0.00 N/A 0.218±0.00 N/A N/A N/A N/A N/A 0.278±0.12 N/A N/A
ENSMUST00000131046 N/A 0.052±0.02 N/A N/A N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A 0.010±0.00 0.022±0.01
ENSMUST00000156383 N/A 0.202±0.00 N/A N/A N/A N/A N/A 0.105±0.00 N/A N/A 0.192±0.05 1.090±0.00 N/A N/A
ENSMUSG00000020733 ENSMUST00000021077 11.186±5.56 6.499±0.98 33.561±5.00 13.622±0.77 24.302±4.11 89.697±9.03 3.217±1.15 107.765±2.78 56.340±17.00 24.520±2.56 1.347±0.58 29.084±1.51 83.723±40.37 11.230±3.88
ENSMUSG00000047798 ENSMUST00000051264 0.583±0.69 N/A 0.272±0.18 0.028±0.00 0.661±0.32 0.515±0.20 N/A 0.236±0.00 1.037±1.23 1.428±0.00 N/A 0.474±0.18 0.421±0.29 0.095±0.00
ENSMUST00000106561 0.874±0.00 N/A N/A N/A N/A N/A N/A N/A 1.022±1.10 N/A N/A N/A 0.160±0.11 N/A
ENSMUST00000106562 N/A 0.501±0.21 0.094±0.00 0.149±0.00 0.967±0.00 0.647±0.16 0.162±0.01 0.239±0.12 0.651±0.62 4.611±1.05 0.088±0.00 0.525±0.31 0.182±0.14 0.056±0.04
ENSMUST00000124083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146254 N/A 0.163±0.07 0.062±0.04 0.018±0.01 0.225±0.04 0.210±0.03 0.080±0.05 0.056±0.03 0.360±0.33 1.553±0.10 0.016±0.01 0.183±0.09 0.079±0.04 0.017±0.01
ENSMUST00000149335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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