| Source ID |
Type |
Tax ID |
Position |
| ENSMUSG00000042269-ENSMUSG00000031822 |
CGP |
10090 |
8:120166397-120581390  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0000IQ_0002 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0000IQ_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000131149' => 'Gse1 coiled-coil protein',
'ENSG00000131153' => 'GINS complex subunit 2 (Psf2 homolog)',
'ENSG00000153789' => 'family with sequence similarity 92, member B',
'ENSG00000179219' => 'long intergenic non-protein coding RNA 311',
'ENSG00000260417' => null,
'ENSG00000261567' => null,
'ENSG00000262601' => null,
'ENSG00000263968' => 'RNA, 7SL, cytoplasmic 381, pseudogene',
'ENSG00000264203' => null,
'ENSG00000266307' => 'microRNA 5093',
'ENSG00000270124' => null,
'ENSG00000270313' => 'cytochrome c oxidase subunit VIc pseudogene 16',
'ENSG00000275088' => null,
'ENSG00000276331' => null,
'ENSG00000278214' => null,
'ENSG00000278716' => null,
'ENSMUSG00000031821' => 'GINS complex subunit 2 (Psf2 homolog)',
'ENSMUSG00000031822' => 'genetic suppressor element 1',
'ENSMUSG00000042269' => 'family with sequence similarity 92, member B',
'ENSMUSG00000097960' => 'RIKEN cDNA A330074K22 gene',
'ENSMUSG00000097983' => 'predicted gene, 26971',
'ENSMUSG00000098280' => 'microRNA 7687'
),
'gene_name_arr' => array(
'ENSG00000131149' => 'GSE1',
'ENSG00000131153' => 'GINS2',
'ENSG00000153789' => 'FAM92B',
'ENSG00000179219' => 'LINC00311',
'ENSG00000260417' => 'CTD-2542L18.1',
'ENSG00000261567' => 'RP11-680G10.1',
'ENSG00000262601' => 'CTC-786C10.1',
'ENSG00000263968' => 'RN7SL381P',
'ENSG00000264203' => 'AC092377.1',
'ENSG00000266307' => 'MIR5093',
'ENSG00000270124' => 'RP11-118F19.1',
'ENSG00000270313' => 'COX6CP16',
'ENSG00000275088' => 'RP11-442O1.3',
'ENSG00000276331' => 'AC092275.1',
'ENSG00000278214' => 'RP11-442O1.4',
'ENSG00000278716' => 'LA16c-352F7.1',
'ENSMUSG00000031821' => 'Gins2',
'ENSMUSG00000031822' => 'Gse1',
'ENSMUSG00000042269' => 'Fam92b',
'ENSMUSG00000097960' => 'A330074K22Rik',
'ENSMUSG00000097983' => 'Gm26971',
'ENSMUSG00000098280' => 'Mir7687'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 18 => 'Bladder',
(int) 25 => 'Brain',
(int) 35 => 'Breast',
(int) 47 => 'Colon',
(int) 59 => 'Heart',
(int) 71 => 'Kidney',
(int) 82 => 'Liver',
(int) 96 => 'Lung',
(int) 110 => 'Muscle',
(int) 121 => 'Ovary',
(int) 140 => 'Placenta',
(int) 153 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 47,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000253458' => array(
'start' => '85613216',
'end' => '85676204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-002'
),
'ENST00000393243' => array(
'start' => '85613352',
'end' => '85676204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-001'
),
'ENST00000405402' => array(
'start' => '85611409',
'end' => '85673354',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-003'
),
'ENST00000411612' => array(
'start' => '85613157',
'end' => '85655872',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-006'
),
'ENST00000412692' => array(
'start' => '85654432',
'end' => '85676204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-005'
),
'ENST00000438180' => array(
'start' => '85663366',
'end' => '85672893',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-011'
),
'ENST00000469381' => array(
'start' => '85662291',
'end' => '85676204',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-004'
),
'ENST00000471070' => array(
'start' => '85671831',
'end' => '85672648',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GSE1-010'
),
'ENST00000479488' => array(
'start' => '85661490',
'end' => '85663353',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-007'
),
'ENST00000495192' => array(
'start' => '85664540',
'end' => '85666004',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-008'
),
'ENST00000496345' => array(
'start' => '85670628',
'end' => '85672496',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-009'
),
'ENST00000562659' => array(
'start' => '85665020',
'end' => '85666622',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-012'
),
'ENST00000253462' => array(
'start' => '85676198',
'end' => '85688999',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GINS2-001'
),
'ENST00000595355' => array(
'start' => '85678570',
'end' => '85688025',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GINS2-003'
),
'ENST00000596233' => array(
'start' => '85678623',
'end' => '85690073',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GINS2-004'
),
'ENST00000539556' => array(
'start' => '85098358',
'end' => '85112508',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM92B-001'
),
'ENST00000618669' => array(
'start' => '85098370',
'end' => '85108071',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM92B-002'
),
'ENST00000366314' => array(
'start' => '85282958',
'end' => '85285963',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00311-001'
),
'ENST00000567093' => array(
'start' => '85592266',
'end' => '85595720',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2542L18.1-001'
),
'ENST00000568080' => array(
'start' => '85357463',
'end' => '85359449',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-680G10.1-001'
),
'ENST00000574293' => array(
'start' => '85171276',
'end' => '85185363',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-786C10.1-001'
),
'ENST00000577658' => array(
'start' => '85659378',
'end' => '85659675',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL381P-201'
),
'ENST00000582003' => array(
'start' => '85441423',
'end' => '85441492',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC092377.1-201'
),
'ENST00000583199' => array(
'start' => '85306226',
'end' => '85306325',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR5093-201'
),
'ENST00000602862' => array(
'start' => '85580009',
'end' => '85583571',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-118F19.1-001'
),
'ENST00000603667' => array(
'start' => '85278820',
'end' => '85279035',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'COX6CP16-001'
),
'ENST00000621095' => array(
'start' => '85142696',
'end' => '85146001',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-442O1.3-001'
),
'ENST00000620679' => array(
'start' => '85160295',
'end' => '85160381',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC092275.1-201'
),
'ENST00000612023' => array(
'start' => '85137150',
'end' => '85149443',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-442O1.4-001'
),
'ENST00000620845' => array(
'start' => '85489813',
'end' => '85490831',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LA16c-352F7.1-001'
),
'ENSMUST00000034278' => array(
'start' => '120578633',
'end' => '120589304',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gins2-001'
),
'ENSMUST00000126094' => array(
'start' => '120582155',
'end' => '120589034',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gins2-003'
),
'ENSMUST00000146526' => array(
'start' => '120578633',
'end' => '120588980',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Gins2-002'
),
'ENSMUST00000155609' => array(
'start' => '120581544',
'end' => '120586208',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Gins2-004'
),
'ENSMUST00000034279' => array(
'start' => '120488447',
'end' => '120581390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gse1-002'
),
'ENSMUST00000118136' => array(
'start' => '120537429',
'end' => '120579326',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gse1-001'
),
'ENSMUST00000120493' => array(
'start' => '120535857',
'end' => '120579480',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gse1-003'
),
'ENSMUST00000141113' => array(
'start' => '120571329',
'end' => '120575210',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gse1-005'
),
'ENSMUST00000147327' => array(
'start' => '120571281',
'end' => '120573272',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Gse1-004'
),
'ENSMUST00000180448' => array(
'start' => '120230536',
'end' => '120553634',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gse1-006'
),
'ENSMUST00000048786' => array(
'start' => '120166397',
'end' => '120177466',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fam92b-001'
),
'ENSMUST00000135567' => array(
'start' => '120171740',
'end' => '120177427',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fam92b-003'
),
'ENSMUST00000142478' => array(
'start' => '120174717',
'end' => '120177447',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Fam92b-002'
),
'ENSMUST00000153177' => array(
'start' => '120167386',
'end' => '120177363',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Fam92b-004'
),
'ENSMUST00000183235' => array(
'start' => '120204434',
'end' => '120228230',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'A330074K22Rik-001'
),
'ENSMUST00000182423' => array(
'start' => '120520615',
'end' => '120521686',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm26971-001'
),
'ENSMUST00000184722' => array(
'start' => '120538696',
'end' => '120538754',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir7687-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0000IQ_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0000IQ_0001' => array(
'genes_in_region' => array(
'ENSG00000131149' => array(
[maximum depth reached]
),
'ENSG00000131153' => array(
[maximum depth reached]
),
'ENSG00000153789' => array(
[maximum depth reached]
),
'ENSG00000179219' => array(
[maximum depth reached]
),
'ENSG00000260417' => array(
[maximum depth reached]
),
'ENSG00000261567' => array(
[maximum depth reached]
),
'ENSG00000262601' => array(
[maximum depth reached]
),
'ENSG00000263968' => array(
[maximum depth reached]
),
'ENSG00000266307' => array(
[maximum depth reached]
),
'ENSG00000270124' => array(
[maximum depth reached]
),
'ENSG00000270313' => array(
[maximum depth reached]
),
'ENSG00000275088' => array(
[maximum depth reached]
),
'ENSG00000278214' => array(
[maximum depth reached]
),
'ENSG00000278716' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Lung',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Brain',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Liver',
(int) 44 => 'Ovary',
(int) 45 => 'Ovary',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Brain',
(int) 49 => 'Breast',
(int) 50 => 'Heart',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Ovary',
(int) 54 => 'Testis',
(int) 55 => 'Adrenal',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Lung',
(int) 59 => 'Ovary',
(int) 60 => 'Testis',
(int) 61 => 'Adipose',
(int) 62 => 'Adrenal',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Lung',
(int) 71 => 'Muscle',
(int) 72 => 'Ovary',
(int) 73 => 'Testis',
(int) 74 => 'Adipose',
(int) 75 => 'Adrenal',
(int) 76 => 'Bladder',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Kidney',
(int) 82 => 'Liver',
(int) 83 => 'Lung',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Adrenal',
(int) 89 => 'Bladder',
(int) 90 => 'Colon',
(int) 91 => 'Heart',
(int) 92 => 'Kidney',
(int) 93 => 'Liver',
(int) 94 => 'Muscle',
(int) 95 => 'Ovary',
(int) 96 => 'Placenta',
(int) 97 => 'Adipose',
(int) 98 => 'Adrenal',
(int) 99 => 'Bladder',
(int) 100 => 'Brain',
(int) 101 => 'Breast',
(int) 102 => 'Colon',
(int) 103 => 'Heart',
(int) 104 => 'Kidney',
(int) 105 => 'Liver',
(int) 106 => 'Lung',
(int) 107 => 'Muscle',
(int) 108 => 'Ovary',
(int) 109 => 'Placenta',
(int) 110 => 'Testis',
(int) 111 => 'Adipose',
(int) 112 => 'Adrenal',
(int) 113 => 'Brain',
(int) 114 => 'Breast',
(int) 115 => 'Colon',
(int) 116 => 'Heart',
(int) 117 => 'Kidney',
(int) 118 => 'Liver',
(int) 119 => 'Lung',
(int) 120 => 'Ovary',
(int) 121 => 'Placenta',
(int) 122 => 'Testis',
(int) 123 => 'Testis',
(int) 124 => 'Bladder',
(int) 125 => 'Breast',
(int) 126 => 'Colon',
(int) 127 => 'Heart',
(int) 128 => 'Lung',
(int) 129 => 'Ovary',
(int) 130 => 'Placenta',
(int) 131 => 'Liver',
(int) 132 => 'Ovary',
(int) 133 => 'Testis',
(int) 134 => 'Adrenal',
(int) 135 => 'Colon',
(int) 136 => 'Heart',
(int) 137 => 'Kidney',
(int) 138 => 'Liver',
(int) 139 => 'Lung',
(int) 140 => 'Muscle',
(int) 141 => 'Ovary',
(int) 142 => 'Placenta',
(int) 143 => 'Testis',
(int) 144 => 'Adipose',
(int) 145 => 'Adrenal',
(int) 146 => 'Bladder',
(int) 147 => 'Brain',
(int) 148 => 'Breast',
(int) 149 => 'Colon',
(int) 150 => 'Heart',
(int) 151 => 'Kidney',
(int) 152 => 'Liver',
(int) 153 => 'Lung',
(int) 154 => 'Muscle',
(int) 155 => 'Ovary',
(int) 156 => 'Placenta',
(int) 157 => 'Testis',
(int) 158 => 'Bladder',
(int) 159 => 'Breast',
(int) 160 => 'Colon',
(int) 161 => 'Heart',
(int) 162 => 'Kidney',
(int) 163 => 'Liver',
(int) 164 => 'Lung',
(int) 165 => 'Muscle',
(int) 166 => 'Ovary',
(int) 167 => 'Placenta',
(int) 168 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000131149' => 'Gse1 coiled-coil protein',
'ENSG00000131153' => 'GINS complex subunit 2 (Psf2 homolog)',
'ENSG00000153789' => 'family with sequence similarity 92, member B',
'ENSG00000179219' => 'long intergenic non-protein coding RNA 311',
'ENSG00000260417' => null,
'ENSG00000261567' => null,
'ENSG00000262601' => null,
'ENSG00000263968' => 'RNA, 7SL, cytoplasmic 381, pseudogene',
'ENSG00000264203' => null,
'ENSG00000266307' => 'microRNA 5093',
'ENSG00000270124' => null,
'ENSG00000270313' => 'cytochrome c oxidase subunit VIc pseudogene 16',
'ENSG00000275088' => null,
'ENSG00000276331' => null,
'ENSG00000278214' => null,
'ENSG00000278716' => null,
'ENSMUSG00000031821' => 'GINS complex subunit 2 (Psf2 homolog)',
'ENSMUSG00000031822' => 'genetic suppressor element 1',
'ENSMUSG00000042269' => 'family with sequence similarity 92, member B',
'ENSMUSG00000097960' => 'RIKEN cDNA A330074K22 gene',
'ENSMUSG00000097983' => 'predicted gene, 26971',
'ENSMUSG00000098280' => 'microRNA 7687'
)
$gene_name_arr = array(
'ENSG00000131149' => 'GSE1',
'ENSG00000131153' => 'GINS2',
'ENSG00000153789' => 'FAM92B',
'ENSG00000179219' => 'LINC00311',
'ENSG00000260417' => 'CTD-2542L18.1',
'ENSG00000261567' => 'RP11-680G10.1',
'ENSG00000262601' => 'CTC-786C10.1',
'ENSG00000263968' => 'RN7SL381P',
'ENSG00000264203' => 'AC092377.1',
'ENSG00000266307' => 'MIR5093',
'ENSG00000270124' => 'RP11-118F19.1',
'ENSG00000270313' => 'COX6CP16',
'ENSG00000275088' => 'RP11-442O1.3',
'ENSG00000276331' => 'AC092275.1',
'ENSG00000278214' => 'RP11-442O1.4',
'ENSG00000278716' => 'LA16c-352F7.1',
'ENSMUSG00000031821' => 'Gins2',
'ENSMUSG00000031822' => 'Gse1',
'ENSMUSG00000042269' => 'Fam92b',
'ENSMUSG00000097960' => 'A330074K22Rik',
'ENSMUSG00000097983' => 'Gm26971',
'ENSMUSG00000098280' => 'Mir7687'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000IQ_0001',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '85098358',
'seq_end' => '85676204',
'region_length' => '577846',
'region_type' => 'CGP',
'el_id' => 'ENSG00000153789-ENSG00000131149'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000IQ_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '120166397',
'seq_end' => '120581390',
'region_length' => '414993',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000042269-ENSMUSG00000031822'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 18 => 'Bladder',
(int) 25 => 'Brain',
(int) 35 => 'Breast',
(int) 47 => 'Colon',
(int) 59 => 'Heart',
(int) 71 => 'Kidney',
(int) 82 => 'Liver',
(int) 96 => 'Lung',
(int) 110 => 'Muscle',
(int) 121 => 'Ovary',
(int) 140 => 'Placenta',
(int) 153 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 47
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000253458' => array(
'start' => '85613216',
'end' => '85676204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-002'
),
'ENST00000393243' => array(
'start' => '85613352',
'end' => '85676204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-001'
),
'ENST00000405402' => array(
'start' => '85611409',
'end' => '85673354',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-003'
),
'ENST00000411612' => array(
'start' => '85613157',
'end' => '85655872',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-006'
),
'ENST00000412692' => array(
'start' => '85654432',
'end' => '85676204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-005'
),
'ENST00000438180' => array(
'start' => '85663366',
'end' => '85672893',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-011'
),
'ENST00000469381' => array(
'start' => '85662291',
'end' => '85676204',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-004'
),
'ENST00000471070' => array(
'start' => '85671831',
'end' => '85672648',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GSE1-010'
),
'ENST00000479488' => array(
'start' => '85661490',
'end' => '85663353',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-007'
),
'ENST00000495192' => array(
'start' => '85664540',
'end' => '85666004',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-008'
),
'ENST00000496345' => array(
'start' => '85670628',
'end' => '85672496',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-009'
),
'ENST00000562659' => array(
'start' => '85665020',
'end' => '85666622',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-012'
),
'ENST00000253462' => array(
'start' => '85676198',
'end' => '85688999',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GINS2-001'
),
'ENST00000595355' => array(
'start' => '85678570',
'end' => '85688025',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GINS2-003'
),
'ENST00000596233' => array(
'start' => '85678623',
'end' => '85690073',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GINS2-004'
),
'ENST00000539556' => array(
'start' => '85098358',
'end' => '85112508',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM92B-001'
),
'ENST00000618669' => array(
'start' => '85098370',
'end' => '85108071',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM92B-002'
),
'ENST00000366314' => array(
'start' => '85282958',
'end' => '85285963',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00311-001'
),
'ENST00000567093' => array(
'start' => '85592266',
'end' => '85595720',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2542L18.1-001'
),
'ENST00000568080' => array(
'start' => '85357463',
'end' => '85359449',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-680G10.1-001'
),
'ENST00000574293' => array(
'start' => '85171276',
'end' => '85185363',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-786C10.1-001'
),
'ENST00000577658' => array(
'start' => '85659378',
'end' => '85659675',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL381P-201'
),
'ENST00000582003' => array(
'start' => '85441423',
'end' => '85441492',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC092377.1-201'
),
'ENST00000583199' => array(
'start' => '85306226',
'end' => '85306325',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR5093-201'
),
'ENST00000602862' => array(
'start' => '85580009',
'end' => '85583571',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-118F19.1-001'
),
'ENST00000603667' => array(
'start' => '85278820',
'end' => '85279035',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'COX6CP16-001'
),
'ENST00000621095' => array(
'start' => '85142696',
'end' => '85146001',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-442O1.3-001'
),
'ENST00000620679' => array(
'start' => '85160295',
'end' => '85160381',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC092275.1-201'
),
'ENST00000612023' => array(
'start' => '85137150',
'end' => '85149443',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-442O1.4-001'
),
'ENST00000620845' => array(
'start' => '85489813',
'end' => '85490831',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LA16c-352F7.1-001'
),
'ENSMUST00000034278' => array(
'start' => '120578633',
'end' => '120589304',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gins2-001'
),
'ENSMUST00000126094' => array(
'start' => '120582155',
'end' => '120589034',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gins2-003'
),
'ENSMUST00000146526' => array(
'start' => '120578633',
'end' => '120588980',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Gins2-002'
),
'ENSMUST00000155609' => array(
'start' => '120581544',
'end' => '120586208',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Gins2-004'
),
'ENSMUST00000034279' => array(
'start' => '120488447',
'end' => '120581390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gse1-002'
),
'ENSMUST00000118136' => array(
'start' => '120537429',
'end' => '120579326',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gse1-001'
),
'ENSMUST00000120493' => array(
'start' => '120535857',
'end' => '120579480',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gse1-003'
),
'ENSMUST00000141113' => array(
'start' => '120571329',
'end' => '120575210',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gse1-005'
),
'ENSMUST00000147327' => array(
'start' => '120571281',
'end' => '120573272',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Gse1-004'
),
'ENSMUST00000180448' => array(
'start' => '120230536',
'end' => '120553634',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gse1-006'
),
'ENSMUST00000048786' => array(
'start' => '120166397',
'end' => '120177466',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fam92b-001'
),
'ENSMUST00000135567' => array(
'start' => '120171740',
'end' => '120177427',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fam92b-003'
),
'ENSMUST00000142478' => array(
'start' => '120174717',
'end' => '120177447',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Fam92b-002'
),
'ENSMUST00000153177' => array(
'start' => '120167386',
'end' => '120177363',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Fam92b-004'
),
'ENSMUST00000183235' => array(
'start' => '120204434',
'end' => '120228230',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'A330074K22Rik-001'
),
'ENSMUST00000182423' => array(
'start' => '120520615',
'end' => '120521686',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm26971-001'
),
'ENSMUST00000184722' => array(
'start' => '120538696',
'end' => '120538754',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir7687-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0000IQ_0001' => array(
'genes_in_region' => array(
'ENSG00000131149' => array(
[maximum depth reached]
),
'ENSG00000131153' => array(
[maximum depth reached]
),
'ENSG00000153789' => array(
[maximum depth reached]
),
'ENSG00000179219' => array(
[maximum depth reached]
),
'ENSG00000260417' => array(
[maximum depth reached]
),
'ENSG00000261567' => array(
[maximum depth reached]
),
'ENSG00000262601' => array(
[maximum depth reached]
),
'ENSG00000263968' => array(
[maximum depth reached]
),
'ENSG00000266307' => array(
[maximum depth reached]
),
'ENSG00000270124' => array(
[maximum depth reached]
),
'ENSG00000270313' => array(
[maximum depth reached]
),
'ENSG00000275088' => array(
[maximum depth reached]
),
'ENSG00000278214' => array(
[maximum depth reached]
),
'ENSG00000278716' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Lung',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Brain',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Liver',
(int) 44 => 'Ovary',
(int) 45 => 'Ovary',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Brain',
(int) 49 => 'Breast',
(int) 50 => 'Heart',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Ovary',
(int) 54 => 'Testis',
(int) 55 => 'Adrenal',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Lung',
(int) 59 => 'Ovary',
(int) 60 => 'Testis',
(int) 61 => 'Adipose',
(int) 62 => 'Adrenal',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Lung',
(int) 71 => 'Muscle',
(int) 72 => 'Ovary',
(int) 73 => 'Testis',
(int) 74 => 'Adipose',
(int) 75 => 'Adrenal',
(int) 76 => 'Bladder',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Kidney',
(int) 82 => 'Liver',
(int) 83 => 'Lung',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Adrenal',
(int) 89 => 'Bladder',
(int) 90 => 'Colon',
(int) 91 => 'Heart',
(int) 92 => 'Kidney',
(int) 93 => 'Liver',
(int) 94 => 'Muscle',
(int) 95 => 'Ovary',
(int) 96 => 'Placenta',
(int) 97 => 'Adipose',
(int) 98 => 'Adrenal',
(int) 99 => 'Bladder',
(int) 100 => 'Brain',
(int) 101 => 'Breast',
(int) 102 => 'Colon',
(int) 103 => 'Heart',
(int) 104 => 'Kidney',
(int) 105 => 'Liver',
(int) 106 => 'Lung',
(int) 107 => 'Muscle',
(int) 108 => 'Ovary',
(int) 109 => 'Placenta',
(int) 110 => 'Testis',
(int) 111 => 'Adipose',
(int) 112 => 'Adrenal',
(int) 113 => 'Brain',
(int) 114 => 'Breast',
(int) 115 => 'Colon',
(int) 116 => 'Heart',
(int) 117 => 'Kidney',
(int) 118 => 'Liver',
(int) 119 => 'Lung',
(int) 120 => 'Ovary',
(int) 121 => 'Placenta',
(int) 122 => 'Testis',
(int) 123 => 'Testis',
(int) 124 => 'Bladder',
(int) 125 => 'Breast',
(int) 126 => 'Colon',
(int) 127 => 'Heart',
(int) 128 => 'Lung',
(int) 129 => 'Ovary',
(int) 130 => 'Placenta',
(int) 131 => 'Liver',
(int) 132 => 'Ovary',
(int) 133 => 'Testis',
(int) 134 => 'Adrenal',
(int) 135 => 'Colon',
(int) 136 => 'Heart',
(int) 137 => 'Kidney',
(int) 138 => 'Liver',
(int) 139 => 'Lung',
(int) 140 => 'Muscle',
(int) 141 => 'Ovary',
(int) 142 => 'Placenta',
(int) 143 => 'Testis',
(int) 144 => 'Adipose',
(int) 145 => 'Adrenal',
(int) 146 => 'Bladder',
(int) 147 => 'Brain',
(int) 148 => 'Breast',
(int) 149 => 'Colon',
(int) 150 => 'Heart',
(int) 151 => 'Kidney',
(int) 152 => 'Liver',
(int) 153 => 'Lung',
(int) 154 => 'Muscle',
(int) 155 => 'Ovary',
(int) 156 => 'Placenta',
(int) 157 => 'Testis',
(int) 158 => 'Bladder',
(int) 159 => 'Breast',
(int) 160 => 'Colon',
(int) 161 => 'Heart',
(int) 162 => 'Kidney',
(int) 163 => 'Liver',
(int) 164 => 'Lung',
(int) 165 => 'Muscle',
(int) 166 => 'Ovary',
(int) 167 => 'Placenta',
(int) 168 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0000IQ_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '120166397',
'seq_end' => '120581390',
'region_length' => '414993',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000042269-ENSMUSG00000031822'
)
)
$gene_el = array(
'ENST00000620845' => array(
'Bladder' => array(
'average_FPKM' => '0.071',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.575',
'stddev_FPKM' => '0.52'
),
'Colon' => array(
'average_FPKM' => '0.145',
'stddev_FPKM' => '0.03'
),
'Heart' => array(
'average_FPKM' => '0.388',
'stddev_FPKM' => '0.31'
),
'Kidney' => array(
'average_FPKM' => '0.269',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.692',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.412',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '1.159',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.575',
'stddev_FPKM' => '0.07'
),
'Placenta' => array(
'average_FPKM' => '0.135',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.237',
'stddev_FPKM' => '0.09'
)
)
)
$gene_key = 'ENSG00000278716'
$is_first = false
$tran_el = array(
'Bladder' => array(
'average_FPKM' => '0.071',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.575',
'stddev_FPKM' => '0.52'
),
'Colon' => array(
'average_FPKM' => '0.145',
'stddev_FPKM' => '0.03'
),
'Heart' => array(
'average_FPKM' => '0.388',
'stddev_FPKM' => '0.31'
),
'Kidney' => array(
'average_FPKM' => '0.269',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.692',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.412',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '1.159',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.575',
'stddev_FPKM' => '0.07'
),
'Placenta' => array(
'average_FPKM' => '0.135',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.237',
'stddev_FPKM' => '0.09'
)
)
$tran_key = 'ENST00000620845'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0000IQ_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000131149' => 'Gse1 coiled-coil protein',
'ENSG00000131153' => 'GINS complex subunit 2 (Psf2 homolog)',
'ENSG00000153789' => 'family with sequence similarity 92, member B',
'ENSG00000179219' => 'long intergenic non-protein coding RNA 311',
'ENSG00000260417' => null,
'ENSG00000261567' => null,
'ENSG00000262601' => null,
'ENSG00000263968' => 'RNA, 7SL, cytoplasmic 381, pseudogene',
'ENSG00000264203' => null,
'ENSG00000266307' => 'microRNA 5093',
'ENSG00000270124' => null,
'ENSG00000270313' => 'cytochrome c oxidase subunit VIc pseudogene 16',
'ENSG00000275088' => null,
'ENSG00000276331' => null,
'ENSG00000278214' => null,
'ENSG00000278716' => null,
'ENSMUSG00000031821' => 'GINS complex subunit 2 (Psf2 homolog)',
'ENSMUSG00000031822' => 'genetic suppressor element 1',
'ENSMUSG00000042269' => 'family with sequence similarity 92, member B',
'ENSMUSG00000097960' => 'RIKEN cDNA A330074K22 gene',
'ENSMUSG00000097983' => 'predicted gene, 26971',
'ENSMUSG00000098280' => 'microRNA 7687'
),
'gene_name_arr' => array(
'ENSG00000131149' => 'GSE1',
'ENSG00000131153' => 'GINS2',
'ENSG00000153789' => 'FAM92B',
'ENSG00000179219' => 'LINC00311',
'ENSG00000260417' => 'CTD-2542L18.1',
'ENSG00000261567' => 'RP11-680G10.1',
'ENSG00000262601' => 'CTC-786C10.1',
'ENSG00000263968' => 'RN7SL381P',
'ENSG00000264203' => 'AC092377.1',
'ENSG00000266307' => 'MIR5093',
'ENSG00000270124' => 'RP11-118F19.1',
'ENSG00000270313' => 'COX6CP16',
'ENSG00000275088' => 'RP11-442O1.3',
'ENSG00000276331' => 'AC092275.1',
'ENSG00000278214' => 'RP11-442O1.4',
'ENSG00000278716' => 'LA16c-352F7.1',
'ENSMUSG00000031821' => 'Gins2',
'ENSMUSG00000031822' => 'Gse1',
'ENSMUSG00000042269' => 'Fam92b',
'ENSMUSG00000097960' => 'A330074K22Rik',
'ENSMUSG00000097983' => 'Gm26971',
'ENSMUSG00000098280' => 'Mir7687'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 18 => 'Bladder',
(int) 25 => 'Brain',
(int) 35 => 'Breast',
(int) 47 => 'Colon',
(int) 59 => 'Heart',
(int) 71 => 'Kidney',
(int) 82 => 'Liver',
(int) 96 => 'Lung',
(int) 110 => 'Muscle',
(int) 121 => 'Ovary',
(int) 140 => 'Placenta',
(int) 153 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 47,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000253458' => array(
'start' => '85613216',
'end' => '85676204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-002'
),
'ENST00000393243' => array(
'start' => '85613352',
'end' => '85676204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-001'
),
'ENST00000405402' => array(
'start' => '85611409',
'end' => '85673354',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-003'
),
'ENST00000411612' => array(
'start' => '85613157',
'end' => '85655872',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-006'
),
'ENST00000412692' => array(
'start' => '85654432',
'end' => '85676204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-005'
),
'ENST00000438180' => array(
'start' => '85663366',
'end' => '85672893',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-011'
),
'ENST00000469381' => array(
'start' => '85662291',
'end' => '85676204',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-004'
),
'ENST00000471070' => array(
'start' => '85671831',
'end' => '85672648',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GSE1-010'
),
'ENST00000479488' => array(
'start' => '85661490',
'end' => '85663353',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-007'
),
'ENST00000495192' => array(
'start' => '85664540',
'end' => '85666004',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-008'
),
'ENST00000496345' => array(
'start' => '85670628',
'end' => '85672496',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-009'
),
'ENST00000562659' => array(
'start' => '85665020',
'end' => '85666622',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-012'
),
'ENST00000253462' => array(
'start' => '85676198',
'end' => '85688999',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GINS2-001'
),
'ENST00000595355' => array(
'start' => '85678570',
'end' => '85688025',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GINS2-003'
),
'ENST00000596233' => array(
'start' => '85678623',
'end' => '85690073',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GINS2-004'
),
'ENST00000539556' => array(
'start' => '85098358',
'end' => '85112508',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM92B-001'
),
'ENST00000618669' => array(
'start' => '85098370',
'end' => '85108071',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM92B-002'
),
'ENST00000366314' => array(
'start' => '85282958',
'end' => '85285963',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00311-001'
),
'ENST00000567093' => array(
'start' => '85592266',
'end' => '85595720',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2542L18.1-001'
),
'ENST00000568080' => array(
'start' => '85357463',
'end' => '85359449',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-680G10.1-001'
),
'ENST00000574293' => array(
'start' => '85171276',
'end' => '85185363',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-786C10.1-001'
),
'ENST00000577658' => array(
'start' => '85659378',
'end' => '85659675',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL381P-201'
),
'ENST00000582003' => array(
'start' => '85441423',
'end' => '85441492',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC092377.1-201'
),
'ENST00000583199' => array(
'start' => '85306226',
'end' => '85306325',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR5093-201'
),
'ENST00000602862' => array(
'start' => '85580009',
'end' => '85583571',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-118F19.1-001'
),
'ENST00000603667' => array(
'start' => '85278820',
'end' => '85279035',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'COX6CP16-001'
),
'ENST00000621095' => array(
'start' => '85142696',
'end' => '85146001',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-442O1.3-001'
),
'ENST00000620679' => array(
'start' => '85160295',
'end' => '85160381',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC092275.1-201'
),
'ENST00000612023' => array(
'start' => '85137150',
'end' => '85149443',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-442O1.4-001'
),
'ENST00000620845' => array(
'start' => '85489813',
'end' => '85490831',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LA16c-352F7.1-001'
),
'ENSMUST00000034278' => array(
'start' => '120578633',
'end' => '120589304',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gins2-001'
),
'ENSMUST00000126094' => array(
'start' => '120582155',
'end' => '120589034',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gins2-003'
),
'ENSMUST00000146526' => array(
'start' => '120578633',
'end' => '120588980',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Gins2-002'
),
'ENSMUST00000155609' => array(
'start' => '120581544',
'end' => '120586208',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Gins2-004'
),
'ENSMUST00000034279' => array(
'start' => '120488447',
'end' => '120581390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gse1-002'
),
'ENSMUST00000118136' => array(
'start' => '120537429',
'end' => '120579326',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gse1-001'
),
'ENSMUST00000120493' => array(
'start' => '120535857',
'end' => '120579480',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gse1-003'
),
'ENSMUST00000141113' => array(
'start' => '120571329',
'end' => '120575210',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gse1-005'
),
'ENSMUST00000147327' => array(
'start' => '120571281',
'end' => '120573272',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Gse1-004'
),
'ENSMUST00000180448' => array(
'start' => '120230536',
'end' => '120553634',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gse1-006'
),
'ENSMUST00000048786' => array(
'start' => '120166397',
'end' => '120177466',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fam92b-001'
),
'ENSMUST00000135567' => array(
'start' => '120171740',
'end' => '120177427',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fam92b-003'
),
'ENSMUST00000142478' => array(
'start' => '120174717',
'end' => '120177447',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Fam92b-002'
),
'ENSMUST00000153177' => array(
'start' => '120167386',
'end' => '120177363',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Fam92b-004'
),
'ENSMUST00000183235' => array(
'start' => '120204434',
'end' => '120228230',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'A330074K22Rik-001'
),
'ENSMUST00000182423' => array(
'start' => '120520615',
'end' => '120521686',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm26971-001'
),
'ENSMUST00000184722' => array(
'start' => '120538696',
'end' => '120538754',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir7687-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0000IQ_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0000IQ_0001' => array(
'genes_in_region' => array(
'ENSG00000131149' => array(
[maximum depth reached]
),
'ENSG00000131153' => array(
[maximum depth reached]
),
'ENSG00000153789' => array(
[maximum depth reached]
),
'ENSG00000179219' => array(
[maximum depth reached]
),
'ENSG00000260417' => array(
[maximum depth reached]
),
'ENSG00000261567' => array(
[maximum depth reached]
),
'ENSG00000262601' => array(
[maximum depth reached]
),
'ENSG00000263968' => array(
[maximum depth reached]
),
'ENSG00000266307' => array(
[maximum depth reached]
),
'ENSG00000270124' => array(
[maximum depth reached]
),
'ENSG00000270313' => array(
[maximum depth reached]
),
'ENSG00000275088' => array(
[maximum depth reached]
),
'ENSG00000278214' => array(
[maximum depth reached]
),
'ENSG00000278716' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Lung',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Brain',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Liver',
(int) 44 => 'Ovary',
(int) 45 => 'Ovary',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Brain',
(int) 49 => 'Breast',
(int) 50 => 'Heart',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Ovary',
(int) 54 => 'Testis',
(int) 55 => 'Adrenal',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Lung',
(int) 59 => 'Ovary',
(int) 60 => 'Testis',
(int) 61 => 'Adipose',
(int) 62 => 'Adrenal',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Lung',
(int) 71 => 'Muscle',
(int) 72 => 'Ovary',
(int) 73 => 'Testis',
(int) 74 => 'Adipose',
(int) 75 => 'Adrenal',
(int) 76 => 'Bladder',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Kidney',
(int) 82 => 'Liver',
(int) 83 => 'Lung',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Adrenal',
(int) 89 => 'Bladder',
(int) 90 => 'Colon',
(int) 91 => 'Heart',
(int) 92 => 'Kidney',
(int) 93 => 'Liver',
(int) 94 => 'Muscle',
(int) 95 => 'Ovary',
(int) 96 => 'Placenta',
(int) 97 => 'Adipose',
(int) 98 => 'Adrenal',
(int) 99 => 'Bladder',
(int) 100 => 'Brain',
(int) 101 => 'Breast',
(int) 102 => 'Colon',
(int) 103 => 'Heart',
(int) 104 => 'Kidney',
(int) 105 => 'Liver',
(int) 106 => 'Lung',
(int) 107 => 'Muscle',
(int) 108 => 'Ovary',
(int) 109 => 'Placenta',
(int) 110 => 'Testis',
(int) 111 => 'Adipose',
(int) 112 => 'Adrenal',
(int) 113 => 'Brain',
(int) 114 => 'Breast',
(int) 115 => 'Colon',
(int) 116 => 'Heart',
(int) 117 => 'Kidney',
(int) 118 => 'Liver',
(int) 119 => 'Lung',
(int) 120 => 'Ovary',
(int) 121 => 'Placenta',
(int) 122 => 'Testis',
(int) 123 => 'Testis',
(int) 124 => 'Bladder',
(int) 125 => 'Breast',
(int) 126 => 'Colon',
(int) 127 => 'Heart',
(int) 128 => 'Lung',
(int) 129 => 'Ovary',
(int) 130 => 'Placenta',
(int) 131 => 'Liver',
(int) 132 => 'Ovary',
(int) 133 => 'Testis',
(int) 134 => 'Adrenal',
(int) 135 => 'Colon',
(int) 136 => 'Heart',
(int) 137 => 'Kidney',
(int) 138 => 'Liver',
(int) 139 => 'Lung',
(int) 140 => 'Muscle',
(int) 141 => 'Ovary',
(int) 142 => 'Placenta',
(int) 143 => 'Testis',
(int) 144 => 'Adipose',
(int) 145 => 'Adrenal',
(int) 146 => 'Bladder',
(int) 147 => 'Brain',
(int) 148 => 'Breast',
(int) 149 => 'Colon',
(int) 150 => 'Heart',
(int) 151 => 'Kidney',
(int) 152 => 'Liver',
(int) 153 => 'Lung',
(int) 154 => 'Muscle',
(int) 155 => 'Ovary',
(int) 156 => 'Placenta',
(int) 157 => 'Testis',
(int) 158 => 'Bladder',
(int) 159 => 'Breast',
(int) 160 => 'Colon',
(int) 161 => 'Heart',
(int) 162 => 'Kidney',
(int) 163 => 'Liver',
(int) 164 => 'Lung',
(int) 165 => 'Muscle',
(int) 166 => 'Ovary',
(int) 167 => 'Placenta',
(int) 168 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000131149' => 'Gse1 coiled-coil protein',
'ENSG00000131153' => 'GINS complex subunit 2 (Psf2 homolog)',
'ENSG00000153789' => 'family with sequence similarity 92, member B',
'ENSG00000179219' => 'long intergenic non-protein coding RNA 311',
'ENSG00000260417' => null,
'ENSG00000261567' => null,
'ENSG00000262601' => null,
'ENSG00000263968' => 'RNA, 7SL, cytoplasmic 381, pseudogene',
'ENSG00000264203' => null,
'ENSG00000266307' => 'microRNA 5093',
'ENSG00000270124' => null,
'ENSG00000270313' => 'cytochrome c oxidase subunit VIc pseudogene 16',
'ENSG00000275088' => null,
'ENSG00000276331' => null,
'ENSG00000278214' => null,
'ENSG00000278716' => null,
'ENSMUSG00000031821' => 'GINS complex subunit 2 (Psf2 homolog)',
'ENSMUSG00000031822' => 'genetic suppressor element 1',
'ENSMUSG00000042269' => 'family with sequence similarity 92, member B',
'ENSMUSG00000097960' => 'RIKEN cDNA A330074K22 gene',
'ENSMUSG00000097983' => 'predicted gene, 26971',
'ENSMUSG00000098280' => 'microRNA 7687'
)
$gene_name_arr = array(
'ENSG00000131149' => 'GSE1',
'ENSG00000131153' => 'GINS2',
'ENSG00000153789' => 'FAM92B',
'ENSG00000179219' => 'LINC00311',
'ENSG00000260417' => 'CTD-2542L18.1',
'ENSG00000261567' => 'RP11-680G10.1',
'ENSG00000262601' => 'CTC-786C10.1',
'ENSG00000263968' => 'RN7SL381P',
'ENSG00000264203' => 'AC092377.1',
'ENSG00000266307' => 'MIR5093',
'ENSG00000270124' => 'RP11-118F19.1',
'ENSG00000270313' => 'COX6CP16',
'ENSG00000275088' => 'RP11-442O1.3',
'ENSG00000276331' => 'AC092275.1',
'ENSG00000278214' => 'RP11-442O1.4',
'ENSG00000278716' => 'LA16c-352F7.1',
'ENSMUSG00000031821' => 'Gins2',
'ENSMUSG00000031822' => 'Gse1',
'ENSMUSG00000042269' => 'Fam92b',
'ENSMUSG00000097960' => 'A330074K22Rik',
'ENSMUSG00000097983' => 'Gm26971',
'ENSMUSG00000098280' => 'Mir7687'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000IQ_0001',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '85098358',
'seq_end' => '85676204',
'region_length' => '577846',
'region_type' => 'CGP',
'el_id' => 'ENSG00000153789-ENSG00000131149'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000IQ_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '120166397',
'seq_end' => '120581390',
'region_length' => '414993',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000042269-ENSMUSG00000031822'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 18 => 'Bladder',
(int) 25 => 'Brain',
(int) 35 => 'Breast',
(int) 47 => 'Colon',
(int) 59 => 'Heart',
(int) 71 => 'Kidney',
(int) 82 => 'Liver',
(int) 96 => 'Lung',
(int) 110 => 'Muscle',
(int) 121 => 'Ovary',
(int) 140 => 'Placenta',
(int) 153 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 47
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000253458' => array(
'start' => '85613216',
'end' => '85676204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-002'
),
'ENST00000393243' => array(
'start' => '85613352',
'end' => '85676204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-001'
),
'ENST00000405402' => array(
'start' => '85611409',
'end' => '85673354',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-003'
),
'ENST00000411612' => array(
'start' => '85613157',
'end' => '85655872',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-006'
),
'ENST00000412692' => array(
'start' => '85654432',
'end' => '85676204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-005'
),
'ENST00000438180' => array(
'start' => '85663366',
'end' => '85672893',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GSE1-011'
),
'ENST00000469381' => array(
'start' => '85662291',
'end' => '85676204',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-004'
),
'ENST00000471070' => array(
'start' => '85671831',
'end' => '85672648',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'GSE1-010'
),
'ENST00000479488' => array(
'start' => '85661490',
'end' => '85663353',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-007'
),
'ENST00000495192' => array(
'start' => '85664540',
'end' => '85666004',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-008'
),
'ENST00000496345' => array(
'start' => '85670628',
'end' => '85672496',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-009'
),
'ENST00000562659' => array(
'start' => '85665020',
'end' => '85666622',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'GSE1-012'
),
'ENST00000253462' => array(
'start' => '85676198',
'end' => '85688999',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GINS2-001'
),
'ENST00000595355' => array(
'start' => '85678570',
'end' => '85688025',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GINS2-003'
),
'ENST00000596233' => array(
'start' => '85678623',
'end' => '85690073',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'GINS2-004'
),
'ENST00000539556' => array(
'start' => '85098358',
'end' => '85112508',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM92B-001'
),
'ENST00000618669' => array(
'start' => '85098370',
'end' => '85108071',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM92B-002'
),
'ENST00000366314' => array(
'start' => '85282958',
'end' => '85285963',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00311-001'
),
'ENST00000567093' => array(
'start' => '85592266',
'end' => '85595720',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2542L18.1-001'
),
'ENST00000568080' => array(
'start' => '85357463',
'end' => '85359449',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-680G10.1-001'
),
'ENST00000574293' => array(
'start' => '85171276',
'end' => '85185363',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-786C10.1-001'
),
'ENST00000577658' => array(
'start' => '85659378',
'end' => '85659675',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL381P-201'
),
'ENST00000582003' => array(
'start' => '85441423',
'end' => '85441492',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC092377.1-201'
),
'ENST00000583199' => array(
'start' => '85306226',
'end' => '85306325',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR5093-201'
),
'ENST00000602862' => array(
'start' => '85580009',
'end' => '85583571',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-118F19.1-001'
),
'ENST00000603667' => array(
'start' => '85278820',
'end' => '85279035',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'COX6CP16-001'
),
'ENST00000621095' => array(
'start' => '85142696',
'end' => '85146001',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-442O1.3-001'
),
'ENST00000620679' => array(
'start' => '85160295',
'end' => '85160381',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC092275.1-201'
),
'ENST00000612023' => array(
'start' => '85137150',
'end' => '85149443',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-442O1.4-001'
),
'ENST00000620845' => array(
'start' => '85489813',
'end' => '85490831',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LA16c-352F7.1-001'
),
'ENSMUST00000034278' => array(
'start' => '120578633',
'end' => '120589304',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gins2-001'
),
'ENSMUST00000126094' => array(
'start' => '120582155',
'end' => '120589034',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gins2-003'
),
'ENSMUST00000146526' => array(
'start' => '120578633',
'end' => '120588980',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Gins2-002'
),
'ENSMUST00000155609' => array(
'start' => '120581544',
'end' => '120586208',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Gins2-004'
),
'ENSMUST00000034279' => array(
'start' => '120488447',
'end' => '120581390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gse1-002'
),
'ENSMUST00000118136' => array(
'start' => '120537429',
'end' => '120579326',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gse1-001'
),
'ENSMUST00000120493' => array(
'start' => '120535857',
'end' => '120579480',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gse1-003'
),
'ENSMUST00000141113' => array(
'start' => '120571329',
'end' => '120575210',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gse1-005'
),
'ENSMUST00000147327' => array(
'start' => '120571281',
'end' => '120573272',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Gse1-004'
),
'ENSMUST00000180448' => array(
'start' => '120230536',
'end' => '120553634',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gse1-006'
),
'ENSMUST00000048786' => array(
'start' => '120166397',
'end' => '120177466',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fam92b-001'
),
'ENSMUST00000135567' => array(
'start' => '120171740',
'end' => '120177427',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fam92b-003'
),
'ENSMUST00000142478' => array(
'start' => '120174717',
'end' => '120177447',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Fam92b-002'
),
'ENSMUST00000153177' => array(
'start' => '120167386',
'end' => '120177363',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Fam92b-004'
),
'ENSMUST00000183235' => array(
'start' => '120204434',
'end' => '120228230',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'A330074K22Rik-001'
),
'ENSMUST00000182423' => array(
'start' => '120520615',
'end' => '120521686',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm26971-001'
),
'ENSMUST00000184722' => array(
'start' => '120538696',
'end' => '120538754',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir7687-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0000IQ_0001' => array(
'genes_in_region' => array(
'ENSG00000131149' => array(
[maximum depth reached]
),
'ENSG00000131153' => array(
[maximum depth reached]
),
'ENSG00000153789' => array(
[maximum depth reached]
),
'ENSG00000179219' => array(
[maximum depth reached]
),
'ENSG00000260417' => array(
[maximum depth reached]
),
'ENSG00000261567' => array(
[maximum depth reached]
),
'ENSG00000262601' => array(
[maximum depth reached]
),
'ENSG00000263968' => array(
[maximum depth reached]
),
'ENSG00000266307' => array(
[maximum depth reached]
),
'ENSG00000270124' => array(
[maximum depth reached]
),
'ENSG00000270313' => array(
[maximum depth reached]
),
'ENSG00000275088' => array(
[maximum depth reached]
),
'ENSG00000278214' => array(
[maximum depth reached]
),
'ENSG00000278716' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Lung',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Lung',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Brain',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Liver',
(int) 44 => 'Ovary',
(int) 45 => 'Ovary',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Brain',
(int) 49 => 'Breast',
(int) 50 => 'Heart',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Ovary',
(int) 54 => 'Testis',
(int) 55 => 'Adrenal',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Lung',
(int) 59 => 'Ovary',
(int) 60 => 'Testis',
(int) 61 => 'Adipose',
(int) 62 => 'Adrenal',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Lung',
(int) 71 => 'Muscle',
(int) 72 => 'Ovary',
(int) 73 => 'Testis',
(int) 74 => 'Adipose',
(int) 75 => 'Adrenal',
(int) 76 => 'Bladder',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Kidney',
(int) 82 => 'Liver',
(int) 83 => 'Lung',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Adrenal',
(int) 89 => 'Bladder',
(int) 90 => 'Colon',
(int) 91 => 'Heart',
(int) 92 => 'Kidney',
(int) 93 => 'Liver',
(int) 94 => 'Muscle',
(int) 95 => 'Ovary',
(int) 96 => 'Placenta',
(int) 97 => 'Adipose',
(int) 98 => 'Adrenal',
(int) 99 => 'Bladder',
(int) 100 => 'Brain',
(int) 101 => 'Breast',
(int) 102 => 'Colon',
(int) 103 => 'Heart',
(int) 104 => 'Kidney',
(int) 105 => 'Liver',
(int) 106 => 'Lung',
(int) 107 => 'Muscle',
(int) 108 => 'Ovary',
(int) 109 => 'Placenta',
(int) 110 => 'Testis',
(int) 111 => 'Adipose',
(int) 112 => 'Adrenal',
(int) 113 => 'Brain',
(int) 114 => 'Breast',
(int) 115 => 'Colon',
(int) 116 => 'Heart',
(int) 117 => 'Kidney',
(int) 118 => 'Liver',
(int) 119 => 'Lung',
(int) 120 => 'Ovary',
(int) 121 => 'Placenta',
(int) 122 => 'Testis',
(int) 123 => 'Testis',
(int) 124 => 'Bladder',
(int) 125 => 'Breast',
(int) 126 => 'Colon',
(int) 127 => 'Heart',
(int) 128 => 'Lung',
(int) 129 => 'Ovary',
(int) 130 => 'Placenta',
(int) 131 => 'Liver',
(int) 132 => 'Ovary',
(int) 133 => 'Testis',
(int) 134 => 'Adrenal',
(int) 135 => 'Colon',
(int) 136 => 'Heart',
(int) 137 => 'Kidney',
(int) 138 => 'Liver',
(int) 139 => 'Lung',
(int) 140 => 'Muscle',
(int) 141 => 'Ovary',
(int) 142 => 'Placenta',
(int) 143 => 'Testis',
(int) 144 => 'Adipose',
(int) 145 => 'Adrenal',
(int) 146 => 'Bladder',
(int) 147 => 'Brain',
(int) 148 => 'Breast',
(int) 149 => 'Colon',
(int) 150 => 'Heart',
(int) 151 => 'Kidney',
(int) 152 => 'Liver',
(int) 153 => 'Lung',
(int) 154 => 'Muscle',
(int) 155 => 'Ovary',
(int) 156 => 'Placenta',
(int) 157 => 'Testis',
(int) 158 => 'Bladder',
(int) 159 => 'Breast',
(int) 160 => 'Colon',
(int) 161 => 'Heart',
(int) 162 => 'Kidney',
(int) 163 => 'Liver',
(int) 164 => 'Lung',
(int) 165 => 'Muscle',
(int) 166 => 'Ovary',
(int) 167 => 'Placenta',
(int) 168 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0000IQ_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '120166397',
'seq_end' => '120581390',
'region_length' => '414993',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000042269-ENSMUSG00000031822'
)
)
$gene_el = array(
'ENST00000620845' => array(
'Bladder' => array(
'average_FPKM' => '0.071',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.575',
'stddev_FPKM' => '0.52'
),
'Colon' => array(
'average_FPKM' => '0.145',
'stddev_FPKM' => '0.03'
),
'Heart' => array(
'average_FPKM' => '0.388',
'stddev_FPKM' => '0.31'
),
'Kidney' => array(
'average_FPKM' => '0.269',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.692',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.412',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '1.159',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.575',
'stddev_FPKM' => '0.07'
),
'Placenta' => array(
'average_FPKM' => '0.135',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.237',
'stddev_FPKM' => '0.09'
)
)
)
$gene_key = 'ENSG00000278716'
$is_first = false
$tran_el = array(
'Bladder' => array(
'average_FPKM' => '0.071',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.575',
'stddev_FPKM' => '0.52'
),
'Colon' => array(
'average_FPKM' => '0.145',
'stddev_FPKM' => '0.03'
),
'Heart' => array(
'average_FPKM' => '0.388',
'stddev_FPKM' => '0.31'
),
'Kidney' => array(
'average_FPKM' => '0.269',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.692',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.412',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '1.159',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.575',
'stddev_FPKM' => '0.07'
),
'Placenta' => array(
'average_FPKM' => '0.135',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.237',
'stddev_FPKM' => '0.09'
)
)
$tran_key = 'ENST00000620845'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(GSE1)