C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000RH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000089742-ENSDARG00000013475 CGP 7955 1:54247909-54275393
GeneTranscriptPositionBiotype
ENSDARG00000013475 (cct4)
chaperonin containing TCP1, subunit 4 (delta) 		ENSDART00000026409 (cct4-201) 54262347-54275393 protein_coding
ENSDARG00000089742 (FAM161A)
family with sequence similarity 161, member A 		ENSDART00000127216 (FAM161A-201) 54247909-54255339 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000RH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000170264-ENSG00000115484 CGP 9606 2:61824854-61888804
GeneTranscriptPositionBiotype
ENSG00000115484 (CCT4)
chaperonin containing TCP1, subunit 4 (delta) 		ENST00000394440 (CCT4-001) 61868089-61888804 protein_coding
ENST00000461370 (CCT4-004) 61887948-61888458 processed_transcript
ENST00000461540 (CCT4-003) 61868430-61877026 processed_transcript
ENST00000544079 (CCT4-201) 61868125-61888671 protein_coding
ENSG00000170264 (FAM161A)
family with sequence similarity 161, member A 		ENST00000307507 (FAM161A-003) 61836057-61854064 nonsense_mediated_decay
ENST00000404929 (FAM161A-005) 61824856-61854053 protein_coding
ENST00000405894 (FAM161A-001) 61824856-61854143 protein_coding
ENST00000418113 (FAM161A-004) 61824856-61854028 nonsense_mediated_decay
ENST00000456262 (FAM161A-002) 61824854-61854092 nonsense_mediated_decay
ENST00000478494 (FAM161A-009) 61827104-61836484 retained_intron
ENST00000496369 (FAM161A-008) 61835515-61839524 retained_intron
ENSG00000173163 (COMMD1)
copper metabolism (Murr1) domain containing 1 		ENST00000311832 (COMMD1-001) 61905647-62136247 protein_coding
ENST00000427417 (COMMD1-005) 62000979-62147247 protein_coding
ENST00000444166 (COMMD1-008) 62135845-62146926 protein_coding
ENST00000445644 (COMMD1-004) 61905647-62000875 nonsense_mediated_decay
ENST00000455659 (COMMD1-003) 61905758-62000847 nonsense_mediated_decay
ENST00000458337 (COMMD1-006) 62000979-62146914 protein_coding
ENST00000471704 (COMMD1-007) 61905647-62001092 retained_intron
ENST00000472729 (COMMD1-002) 61888724-62136058 processed_transcript
ENSG00000230702 (RP11-681L4.1)
 ENST00000414975 (RP11-681L4.1-001) 61856695-61857055 processed_pseudogene
ENSG00000236498 (AC107081.5)
 ENST00000425779 (AC107081.5-001) 61868432-61886082 antisense
ENSG00000277498 (RP11-681L4.2)
 ENST00000612715 (RP11-681L4.2-001) 61858137-61860298 unprocessed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000RH_0001ENSDARG00000013475ENSDART00000026409ENSDARG00000089742ENSDART00000127216CIL_0000RH_0002ENSG00000115484ENST00000394440ENST00000461370ENST00000461540ENST00000544079ENSG00000170264ENST00000307507ENST00000404929ENST00000405894ENST00000418113ENST00000456262ENST00000478494ENST00000496369ENSG00000173163ENST00000311832ENST00000427417ENST00000444166ENST00000445644ENST00000455659ENST00000458337ENST00000471704ENST00000472729ENSG00000230702ENST00000414975ENSG00000236498ENST00000425779ENSG00000277498ENST00000612715
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000RH_0001ENSDARG00000013475ENSDART00000026409ENSDARG00000089742ENSDART00000127216CIL_0000RH_0002ENSG00000115484ENST00000394440ENST00000544079ENSG00000170264ENST00000307507ENST00000404929ENST00000405894ENST00000418113ENST00000456262ENST00000478494ENST00000496369ENSG00000173163ENST00000311832ENST00000471704ENST00000472729ENSG00000230702ENST00000414975ENSG00000236498ENST00000425779ENSG00000277498ENST00000612715
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000013475 ENSDART00000026409 N/A N/A N/A 33.322±21.50 N/A N/A 141.948±58.82 28.788±28.13 67.144±0.00 N/A 135.569±0.00 N/A N/A N/A
ENSDARG00000089742 ENSDART00000127216 N/A N/A N/A 0.501±0.06 N/A N/A 0.216±0.06 0.230±0.00 0.019±0.00 N/A 0.094±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115484 ENST00000394440 37.409±0.00 20.147±0.00 1.251±0.00 20.129±0.00 22.719±0.00 19.596±17.08 11.207±0.00 20.048±0.00 8.146±0.00 10.600±7.90 21.234±0.00 41.650±16.35 25.230±6.01 31.814±15.25
ENST00000461370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461540 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544079 N/A 14.385±0.00 4.827±0.00 11.231±4.21 6.272±2.26 13.180±9.20 5.789±4.23 12.702±8.14 9.630±1.45 11.265±3.49 12.708±2.97 55.382±49.64 32.209±28.01 61.153±42.78
ENSG00000170264 ENST00000307507 N/A N/A N/A N/A 0.129±0.00 N/A N/A N/A 0.107±0.00 N/A N/A N/A 0.105±0.00 N/A
ENST00000404929 N/A N/A N/A N/A N/A 0.586±0.00 0.093±0.00 N/A 0.269±0.00 0.121±0.00 N/A 0.528±0.24 0.130±0.04 1.287±0.61
ENST00000405894 N/A N/A 0.125±0.00 0.723±0.52 N/A N/A N/A N/A N/A 0.211±0.11 0.631±0.00 0.737±0.39 0.119±0.02 1.375±0.23
ENST00000418113 0.349±0.00 N/A 0.126±0.00 0.510±0.00 0.123±0.03 N/A N/A N/A 0.046±0.00 0.476±0.00 N/A 0.383±0.00 0.096±0.00 N/A
ENST00000456262 N/A N/A N/A N/A 0.187±0.00 N/A 0.218±0.00 N/A 0.026±0.00 N/A N/A 0.468±0.00 0.089±0.00 0.716±0.00
ENST00000478494 N/A N/A N/A N/A 0.319±0.00 N/A N/A N/A N/A N/A N/A 1.009±0.00 0.390±0.00 N/A
ENST00000496369 N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A N/A 1.194±0.00 0.951±0.00 18.989±0.00
ENSG00000173163 ENST00000311832 N/A N/A 6.140±0.00 15.007±0.00 7.044±0.00 6.461±0.00 6.764±0.00 12.074±0.00 7.104±0.00 N/A 11.425±0.00 N/A 23.693±0.00 N/A
ENST00000427417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471704 N/A N/A N/A N/A N/A N/A 8.158±0.00 N/A 10.627±0.00 8.958±0.00 N/A N/A N/A N/A
ENST00000472729 N/A N/A N/A N/A N/A N/A 24.996±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000230702 ENST00000414975 N/A N/A N/A 0.240±0.00 1.292±0.00 N/A N/A 0.118±0.00 N/A N/A N/A 0.269±0.04 0.145±0.00 0.237±0.08
ENSG00000236498 ENST00000425779 N/A 14.872±0.00 N/A 10.284±0.00 10.368±3.35 26.076±0.00 N/A 17.596±0.00 10.372±0.00 13.068±0.00 N/A N/A N/A 28.492±0.00
ENSG00000277498 ENST00000612715 N/A 0.006±0.00 N/A N/A 0.006±0.00 0.088±0.00 0.006±0.00 N/A N/A 0.074±0.00 N/A 0.013±0.00 N/A 0.137±0.04

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