C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000SI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000277791-ENSG00000276293 CGP 9606 17:38752736-38800126
GeneTranscriptPositionBiotype
ENSG00000274607 (U6)
U6 spliceosomal RNA 		ENST00000613402 (U6.1-250) 38755279-38755400 snRNA
ENSG00000277791 (PSMB3)
proteasome (prosome, macropain) subunit, beta type, 3 		ENST00000610434 (PSMB3-006) 38752747-38760580 protein_coding
ENST00000613870 (PSMB3-002) 38752764-38764225 nonsense_mediated_decay
ENST00000614132 (PSMB3-005) 38760385-38764225 retained_intron
ENST00000618159 (PSMB3-004) 38762051-38764225 retained_intron
ENST00000619426 (PSMB3-001) 38752736-38764231 protein_coding
ENST00000620309 (PSMB3-003) 38752773-38764225 nonsense_mediated_decay
CIL_0000SI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000069744-ENSMUSG00000018547 CGP 10090 11:97703399-97744704
GeneTranscriptPositionBiotype
ENSMUSG00000018547 (Pip4k2b)
phosphatidylinositol-5-phosphate 4-kinase, type II, beta 		ENSMUST00000018691 (Pip4k2b-001) 97715157-97744704 protein_coding
ENSMUST00000144012 (Pip4k2b-002) 97720396-97726743 processed_transcript
ENSMUSG00000069744 (Psmb3)
proteasome (prosome, macropain) subunit, beta type 3 		ENSMUST00000103147 (Psmb3-001) 97703399-97713500 protein_coding
ENSMUST00000129197 (Psmb3-003) 97712062-97713500 retained_intron
ENSMUST00000138265 (Psmb3-002) 97703434-97708064 retained_intron
ENSMUSG00000085145 (Gm11614)
predicted gene 11614 		ENSMUST00000137598 (Gm11614-001) 97723651-97725711 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000SI_0001ENSG00000274607ENST00000613402ENSG00000277791ENST00000610434ENST00000613870ENST00000614132ENST00000618159ENST00000619426ENST00000620309CIL_0000SI_0002ENSMUSG00000018547ENSMUST00000018691ENSMUST00000144012ENSMUSG00000069744ENSMUST00000103147ENSMUST00000129197ENSMUST00000138265ENSMUSG00000085145ENSMUST00000137598
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000SI_0001ENSG00000274607ENST00000613402ENSG00000277791ENST00000610434ENST00000613870ENST00000614132ENST00000619426ENST00000620309CIL_0000SI_0002ENSMUSG00000018547ENSMUST00000018691ENSMUST00000144012ENSMUSG00000069744ENSMUST00000103147ENSMUST00000138265ENSMUSG00000085145ENSMUST00000137598
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000274607 ENST00000613402 N/A 0.612±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000277791 ENST00000610434 23.384±0.00 30.064±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613870 N/A N/A N/A N/A 1.468±0.00 N/A 6.782±0.00 N/A N/A N/A 7.838±0.00 7.679±0.00 N/A N/A
ENST00000614132 N/A N/A N/A N/A N/A N/A 13.297±0.00 N/A 43.400±0.00 30.663±0.00 N/A N/A N/A N/A
ENST00000618159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619426 56.476±0.00 100.693±0.00 1.757±0.00 37.750±17.16 34.604±32.32 29.841±22.36 25.813±14.42 58.285±36.43 43.176±33.80 49.818±35.75 64.361±53.26 74.347±32.83 116.562±48.72 44.000±20.39
ENST00000620309 N/A N/A N/A N/A 4.201±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018547 ENSMUST00000018691 10.037±1.83 8.323±1.06 8.428±0.06 30.132±6.37 11.938±0.65 3.557±0.32 5.717±0.40 4.523±0.18 5.150±0.84 7.269±0.28 18.805±0.44 10.542±1.06 5.185±2.03 1.128±0.37
ENSMUST00000144012 N/A N/A N/A 38.892±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.793±0.00
ENSMUSG00000069744 ENSMUST00000103147 147.835±4.59 153.798±5.20 143.939±8.29 139.296±93.47 145.554±14.74 120.786±11.57 96.175±15.73 163.876±2.32 167.314±44.45 112.251±1.99 97.892±2.96 148.904±34.43 124.220±62.70 38.262±16.63
ENSMUST00000129197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.00
ENSMUSG00000085145 ENSMUST00000137598 0.387±0.05 0.183±0.09 0.069±0.03 0.311±0.04 0.129±0.06 0.112±0.00 0.049±0.00 0.048±0.00 0.061±0.04 0.272±0.03 0.153±0.07 0.351±0.18 0.063±0.02 0.121±0.07

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