C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000TP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000071518-ENSDARG00000000212 CGP 7955 22:11828930-11869256
GeneTranscriptPositionBiotype
ENSDARG00000000212 (zgc:92061)
zgc:92061 		ENSDART00000105808 (zgc:92061-001) 11866190-11869256 protein_coding
ENSDARG00000071518 (KRT222)
keratin 222 		ENSDART00000105813 (KRT222-001) 11828930-11839500 protein_coding
ENSDART00000129343 (KRT222-201) 11828935-11845123 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000TP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000213424-ENSG00000167916 CGP 9606 17:40654665-40703750
GeneTranscriptPositionBiotype
ENSG00000167916 (KRT24)
keratin 24 		ENST00000264651 (KRT24-001) 40697991-40703750 protein_coding
ENSG00000213424 (KRT222)
keratin 222 		ENST00000394049 (KRT222-002) 40654665-40665156 nonsense_mediated_decay
ENST00000394052 (KRT222-001) 40655620-40665141 protein_coding
ENST00000580719 (KRT222-004) 40660158-40665181 nonsense_mediated_decay
ENST00000581564 (KRT222-003) 40657209-40665145 nonsense_mediated_decay
ENSG00000224244 (AC090283.3)
 ENST00000428866 (AC090283.3-001) 40687038-40689360 unprocessed_pseudogene
ENSG00000271876 (AC073508.1)
 ENST00000607244 (AC073508.1-201) 40665624-40665723 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0000TP_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035849-ENSMUSG00000020913 CGP 10090 11:99232761-99285262
GeneTranscriptPositionBiotype
ENSMUSG00000020913 (Krt24)
keratin 24 		ENSMUST00000017255 (Krt24-001) 99279959-99285262 protein_coding
ENSMUSG00000035849 (Krt222)
keratin 222 		ENSMUST00000038214 (Krt222-002) 99233890-99244085 protein_coding
ENSMUST00000103132 (Krt222-001) 99232761-99244067 protein_coding
ENSMUST00000154622 (Krt222-003) 99234943-99238875 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000TP_0001ENSDARG00000000212ENSDART00000105808ENSDARG00000071518ENSDART00000105813ENSDART00000129343CIL_0000TP_0002ENSG00000167916ENST00000264651ENSG00000213424ENST00000394049ENST00000394052ENST00000580719ENST00000581564ENSG00000224244ENST00000428866ENSG00000271876ENST00000607244CIL_0000TP_0003ENSMUSG00000020913ENSMUST00000017255ENSMUSG00000035849ENSMUST00000038214ENSMUST00000103132ENSMUST00000154622
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000TP_0001ENSDARG00000000212ENSDART00000105808ENSDARG00000071518ENSDART00000105813ENSDART00000129343CIL_0000TP_0002ENSG00000167916ENST00000264651ENSG00000213424ENST00000394049ENST00000394052ENSG00000224244ENST00000428866ENSG00000271876ENST00000607244CIL_0000TP_0003ENSMUSG00000020913ENSMUST00000017255ENSMUSG00000035849ENSMUST00000038214ENSMUST00000103132ENSMUST00000154622
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000000212 ENSDART00000105808 N/A N/A N/A 1.135±0.80 N/A N/A 5.873±6.42 12.362±10.50 0.043±0.00 N/A 5.587±0.00 N/A N/A N/A
ENSDARG00000071518 ENSDART00000105813 N/A N/A N/A 8.603±3.18 N/A N/A 0.499±0.37 0.418±0.12 0.017±0.00 N/A N/A N/A N/A N/A
ENSDART00000129343 N/A N/A N/A N/A N/A N/A 0.605±0.00 0.352±0.15 N/A N/A 0.186±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000167916 ENST00000264651 N/A 0.009±0.00 N/A N/A 0.009±0.00 0.588±0.56 0.033±0.00 0.180±0.00 0.295±0.00 N/A N/A 6.028±7.07 30.381±41.62 1.029±0.98
ENSG00000213424 ENST00000394049 N/A N/A N/A 3.767±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000394052 N/A N/A N/A 7.456±1.22 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224244 ENST00000428866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00
ENSG00000271876 ENST00000607244 N/A 1.372±0.00 N/A N/A N/A N/A N/A N/A 1.085±0.00 N/A N/A N/A N/A 0.621±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020913 ENSMUST00000017255 N/A N/A 0.004±0.00 0.021±0.02 0.113±0.04 N/A N/A N/A 0.008±0.00 N/A 0.046±0.00 0.024±0.00 0.006±0.00 0.090±0.02
ENSMUSG00000035849 ENSMUST00000038214 0.323±0.24 0.086±0.03 0.061±0.00 4.400±0.00 0.321±0.09 0.110±0.05 N/A 0.106±0.03 0.037±0.01 N/A 0.309±0.12 0.134±0.05 0.052±0.01 0.066±0.05
ENSMUST00000103132 0.197±0.09 0.159±0.06 0.123±0.06 1.926±1.48 0.161±0.09 0.114±0.02 3.416±0.30 0.235±0.10 0.032±0.02 0.166±0.01 0.479±0.22 0.141±0.06 0.035±0.01 0.038±0.02
ENSMUST00000154622 0.249±0.00 0.167±0.00 N/A 10.045±0.00 N/A 0.141±0.08 N/A N/A N/A 0.206±0.03 N/A 0.236±0.19 N/A 0.068±0.00

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