C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000126_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000060854-ENSDARG00000029482 CGP 7955 17:29404716-29830749
GeneTranscriptPositionBiotype
ENSDARG00000029482 (ush2a)
Usher syndrome 2A (autosomal recessive, mild) 		ENSDART00000086201 (ush2a-001) 29435964-29830749 protein_coding
ENSDARG00000060854 (kctd3)
potassium channel tetramerisation domain containing 3 		ENSDART00000086164 (kctd3-001) 29404716-29429424 protein_coding
ENSDARG00000097219 (si:ch211-214o2.3)
si:ch211-214o2.3 		ENSDART00000154352 (si:ch211-214o2.3-001) 29782461-29787853 antisense
ENSDARG00000097817 (si:ch211-214o2.2)
si:ch211-214o2.2 		ENSDART00000153865 (si:ch211-214o2.2-001) 29781195-29782323 sense_intronic

Danio rerio Ensembl (Zv9)

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CIL_000126_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136636-ENSG00000042781 CGP 9606 1:215567392-216423396
GeneTranscriptPositionBiotype
ENSG00000042781 (USH2A)
Usher syndrome 2A (autosomal recessive, mild) 		ENST00000307340 (USH2A-002) 215622894-216423396 protein_coding
ENST00000366942 (USH2A-001) 216173946-216423396 protein_coding
ENST00000366943 (USH2A-201) 215622894-216423396 protein_coding
ENST00000463147 (USH2A-004) 216083380-216085108 retained_intron
ENST00000481786 (USH2A-003) 216083370-216089139 retained_intron
ENSG00000136636 (KCTD3)
potassium channel tetramerization domain containing 3 		ENST00000259154 (KCTD3-001) 215567392-215621807 protein_coding
ENST00000448333 (KCTD3-003) 215573786-215581179 protein_coding
ENST00000452413 (KCTD3-005) 215602170-215618951 protein_coding
ENST00000465650 (KCTD3-004) 215618705-215620203 processed_transcript
ENST00000495537 (KCTD3-002) 215618245-215621731 processed_transcript
ENSG00000236292 (RP5-1099E6.3)
 ENST00000420867 (RP5-1099E6.3-001) 216194051-216204366 antisense

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000126_0001ENSDARG00000029482ENSDART00000086201ENSDARG00000060854ENSDART00000086164ENSDARG00000097219ENSDART00000154352ENSDARG00000097817ENSDART00000153865CIL_000126_0002ENSG00000042781ENST00000307340ENST00000366942ENST00000366943ENST00000463147ENST00000481786ENSG00000136636ENST00000259154ENST00000448333ENST00000452413ENST00000465650ENST00000495537ENSG00000236292ENST00000420867
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000126_0001ENSDARG00000029482ENSDART00000086201ENSDARG00000060854ENSDART00000086164ENSDARG00000097219ENSDART00000154352ENSDARG00000097817ENSDART00000153865CIL_000126_0002ENSG00000042781ENST00000307340ENST00000366942ENST00000366943ENSG00000136636ENST00000259154ENST00000495537ENSG00000236292ENST00000420867
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000029482 ENSDART00000086201 N/A N/A N/A 0.179±0.01 N/A N/A 0.015±0.01 0.062±0.00 0.023±0.00 N/A 0.013±0.00 N/A N/A N/A
ENSDARG00000060854 ENSDART00000086164 N/A N/A N/A 6.106±4.42 N/A N/A 8.124±6.07 0.725±0.12 0.077±0.00 N/A 1.039±0.00 N/A N/A N/A
ENSDARG00000097219 ENSDART00000154352 N/A N/A N/A 0.074±0.00 N/A N/A 0.169±0.11 0.462±0.26 N/A N/A N/A N/A N/A N/A
ENSDARG00000097817 ENSDART00000153865 N/A N/A N/A 0.306±0.00 N/A N/A N/A N/A 0.141±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000042781 ENST00000307340 0.002±0.00 0.010±0.00 0.010±0.00 0.023±0.00 0.027±0.00 0.020±0.02 0.036±0.03 0.008±0.00 0.055±0.05 0.004±0.00 N/A 0.009±0.01 0.002±0.00 0.220±0.18
ENST00000366942 N/A N/A N/A 0.021±0.00 N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A 0.002±0.00 N/A
ENST00000366943 0.002±0.00 0.010±0.00 0.011±0.00 0.023±0.00 0.027±0.00 0.020±0.02 0.037±0.03 0.008±0.00 0.055±0.05 0.004±0.00 N/A 0.009±0.01 0.002±0.00 0.044±0.00
ENST00000463147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481786 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000136636 ENST00000259154 11.598±0.00 6.106±0.00 3.204±0.00 8.168±4.99 8.974±3.73 8.779±2.37 2.797±1.99 10.443±0.93 7.643±2.78 6.665±0.00 1.290±0.00 8.495±3.44 10.907±4.34 13.193±0.87
ENST00000448333 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495537 N/A N/A N/A 1.263±0.00 N/A N/A N/A N/A N/A 1.420±0.00 N/A N/A N/A N/A
ENSG00000236292 ENST00000420867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.788±0.04

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