C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Usher syndrome 2A (autosomal recessive, mild)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000086201 ush2a-001 ENSDARG00000029482 7955 - 17:29435964-29830749 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000086201
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000086201 0.179±0.01 0.015±0.01 0.062±0.00 0.023±0.00 0.013±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000126 CIL_000126_0001 CGP 17:29404716-29830749
CIL_000127 CIL_000127_0001 CGP 17:29435964-29961297

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0042462 IGI eye photoreceptor cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307340 USH2A-002 protein_coding Homo_sapiens 1.99993e-41 178
ENST00000366943 USH2A-201 protein_coding Homo_sapiens 1.99993e-41 178

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