C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00013N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163811-ENSG00000189350 CGP 9606 2:28894643-29061373
GeneTranscriptPositionBiotype
ENSG00000179270 (C2orf71)
chromosome 2 open reading frame 71 		ENST00000331664 (C2orf71-001) 29061692-29074261 protein_coding
ENST00000602958 (C2orf71-002) 29060976-29062155 processed_transcript
ENSG00000189350 (FAM179A)
family with sequence similarity 179, member A 		ENST00000379558 (FAM179A-003) 28981298-29061373 protein_coding
ENST00000401723 (FAM179A-007) 28956611-29033520 protein_coding
ENST00000420297 (FAM179A-004) 28970939-28999248 protein_coding
ENST00000440012 (FAM179A-005) 29018261-29024374 protein_coding
ENST00000460951 (FAM179A-006) 29032771-29036587 retained_intron
ENST00000465300 (FAM179A-001) 29014467-29052230 processed_transcript
ENST00000475900 (FAM179A-002) 29033431-29052230 retained_intron
ENSG00000222224 (Y_RNA)
Y RNA 		ENST00000410292 (Y_RNA.1-795) 28927243-28927340 misc_RNA
ENSG00000265706 (SNORD53_SNORD92)
Small nucleolar RNA SNORD53/SNORD92 		ENST00000577887 (SNORD53_SNORD92.1-201) 28927983-28928060 snoRNA
CIL_00013N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041057-ENSMUSG00000045761 CGP 10090 17:71616215-71729669
GeneTranscriptPositionBiotype
ENSMUSG00000041057 (Wdr43)
WD repeat domain 43 		ENSMUST00000047086 (Wdr43-201) 71616215-71659031 protein_coding
ENSMUSG00000045761 (Fam179a)
family with sequence similarity 179, member A 		ENSMUST00000097284 (Fam179a-201) 71673261-71729669 protein_coding
ENSMUST00000122869 (Fam179a-005) 71673265-71689164 processed_transcript
ENSMUST00000129072 (Fam179a-003) 71713272-71729669 retained_intron
ENSMUST00000144479 (Fam179a-001) 71686701-71729543 protein_coding
ENSMUST00000153445 (Fam179a-002) 71684805-71729669 protein_coding
ENSMUST00000156665 (Fam179a-004) 71673261-71685172 processed_transcript
ENSMUSG00000092887 (Snord53)
small nucleolar RNA, C/D box 53 		ENSMUST00000175146 (Snord53-201) 71640879-71640956 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00013N_0001ENSG00000179270ENST00000331664ENST00000602958ENSG00000189350ENST00000379558ENST00000401723ENST00000420297ENST00000440012ENST00000460951ENST00000465300ENST00000475900ENSG00000222224ENST00000410292ENSG00000265706ENST00000577887CIL_00013N_0002ENSMUSG00000041057ENSMUST00000047086ENSMUSG00000045761ENSMUST00000097284ENSMUST00000122869ENSMUST00000129072ENSMUST00000144479ENSMUST00000153445ENSMUST00000156665ENSMUSG00000092887ENSMUST00000175146
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00013N_0001ENSG00000179270ENST00000331664ENSG00000189350ENST00000379558ENST00000401723ENST00000440012ENST00000460951ENST00000465300ENST00000475900ENSG00000222224ENST00000410292ENSG00000265706ENST00000577887CIL_00013N_0002ENSMUSG00000041057ENSMUST00000047086ENSMUSG00000045761ENSMUST00000097284ENSMUST00000122869ENSMUST00000129072ENSMUST00000144479ENSMUST00000153445ENSMUST00000156665ENSMUSG00000092887ENSMUST00000175146
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000179270 ENST00000331664 N/A N/A 0.132±0.00 0.057±0.00 0.112±0.00 0.050±0.00 0.206±0.00 0.208±0.00 0.014±0.00 N/A N/A 0.119±0.00 N/A N/A
ENST00000602958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000189350 ENST00000379558 0.036±0.00 0.113±0.00 0.034±0.00 0.040±0.03 0.030±0.01 0.042±0.00 0.105±0.02 0.028±0.02 0.031±0.00 0.266±0.00 N/A 0.086±0.07 0.031±0.03 0.081±0.01
ENST00000401723 N/A N/A 0.765±0.00 N/A N/A N/A N/A N/A N/A N/A 1.033±0.00 N/A N/A N/A
ENST00000420297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440012 N/A N/A N/A N/A 0.471±0.00 N/A N/A N/A N/A N/A N/A 0.583±0.00 N/A N/A
ENST00000460951 N/A N/A N/A 0.690±0.29 N/A N/A N/A N/A N/A 1.338±0.00 N/A 0.600±0.00 N/A N/A
ENST00000465300 N/A N/A N/A 0.299±0.19 0.137±0.00 N/A 2.178±0.00 0.629±0.00 N/A 4.601±0.00 1.474±0.46 3.413±2.81 0.266±0.15 0.672±0.04
ENST00000475900 0.082±0.00 0.155±0.00 N/A 0.135±0.00 0.061±0.02 0.031±0.00 0.113±0.00 0.072±0.00 0.011±0.00 0.094±0.00 0.062±0.00 0.069±0.00 0.021±0.00 0.101±0.00
ENSG00000222224 ENST00000410292 N/A 0.718±0.00 N/A N/A N/A N/A N/A 0.676±0.00 N/A N/A N/A N/A N/A 0.164±0.00
ENSG00000265706 ENST00000577887 0.745±0.00 1.497±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.238±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041057 ENSMUST00000047086 3.131±1.44 6.807±2.52 6.913±0.53 7.653±0.98 3.496±1.31 3.273±1.69 2.059±0.48 2.740±0.41 7.055±6.31 2.126±1.03 5.667±0.32 7.080±7.57 20.652±15.23 2.357±3.63
ENSMUSG00000045761 ENSMUST00000097284 N/A N/A N/A N/A 0.049±0.00 0.045±0.00 N/A N/A N/A 2.968±1.04 N/A 1.811±0.81 N/A N/A
ENSMUST00000122869 N/A N/A N/A N/A 0.534±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129072 0.006±0.00 N/A 0.019±0.00 N/A 0.235±0.04 0.074±0.00 0.402±0.00 0.024±0.00 0.011±0.00 1.754±0.05 0.307±0.13 1.118±0.00 0.015±0.01 0.572±0.27
ENSMUST00000144479 0.097±0.13 0.043±0.02 0.025±0.00 1.288±0.00 0.186±0.13 0.103±0.03 0.629±0.26 0.037±0.01 0.016±0.01 2.810±0.69 0.697±0.20 2.089±0.81 0.010±0.00 0.330±0.08
ENSMUST00000153445 N/A 0.044±0.00 0.075±0.00 N/A 0.108±0.00 0.040±0.00 N/A N/A 0.007±0.00 N/A N/A N/A N/A N/A
ENSMUST00000156665 N/A N/A N/A N/A N/A 0.410±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092887 ENSMUST00000175146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 173.476±0.00 338.487±0.00 N/A

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