C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00016O_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000004470-ENSDARG00000014420 CGP 7955 3:46800816-46855969
GeneTranscriptPositionBiotype
ENSDARG00000004470 (prkcsh)
protein kinase C substrate 80K-H 		ENSDART00000023814 (prkcsh-001) 46802135-46833402 protein_coding
ENSDART00000133283 (prkcsh-003) 46800816-46814362 protein_coding
ENSDART00000136051 (prkcsh-002) 46802391-46814282 protein_coding
ENSDARG00000014420 (elavl3)
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) 		ENSDART00000013717 (elavl3-002) 46841111-46855612 protein_coding
ENSDART00000028610 (elavl3-001) 46839385-46855951 protein_coding
ENSDART00000133036 (elavl3-003) 46849464-46855969 retained_intron
ENSDART00000134092 (elavl3-004) 46841456-46849724 protein_coding
CIL_00016O_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000130175-ENSG00000196361 CGP 9606 19:11435288-11481046
GeneTranscriptPositionBiotype
ENSG00000196361 (ELAVL3)
ELAV like neuron-specific RNA binding protein 3 		ENST00000359227 (ELAVL3-001) 11451326-11481033 protein_coding
ENST00000438662 (ELAVL3-002) 11454403-11480625 protein_coding
ENST00000588853 (ELAVL3-005) 11466176-11480697 protein_coding
ENST00000592218 (ELAVL3-006) 11480253-11481046 processed_transcript
CIL_00016O_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000003402-ENSMUSG00000003410 CGP 10090 9:22003035-22052023
GeneTranscriptPositionBiotype
ENSMUSG00000003402 (Prkcsh)
protein kinase C substrate 80K-H 		ENSMUST00000003493 (Prkcsh-201) 22003035-22014219 protein_coding
ENSMUST00000115331 (Prkcsh-202) 22003035-22014219 protein_coding
ENSMUSG00000003410 (Elavl3)
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) 		ENSMUST00000003501 (Elavl3-201) 22015005-22052023 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00016O_0001ENSDARG00000004470ENSDART00000023814ENSDART00000133283ENSDART00000136051ENSDARG00000014420ENSDART00000013717ENSDART00000028610ENSDART00000133036ENSDART00000134092CIL_00016O_0002ENSG00000196361ENST00000359227ENST00000438662ENST00000588853ENST00000592218CIL_00016O_0003ENSMUSG00000003402ENSMUST00000003493ENSMUST00000115331ENSMUSG00000003410ENSMUST00000003501
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00016O_0001ENSDARG00000004470ENSDART00000023814ENSDARG00000014420ENSDART00000013717ENSDART00000028610CIL_00016O_0002ENSG00000196361ENST00000359227ENST00000438662CIL_00016O_0003ENSMUSG00000003402ENSMUST00000003493ENSMUST00000115331ENSMUSG00000003410ENSMUST00000003501
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004470 ENSDART00000023814 N/A N/A N/A 18.031±4.09 N/A N/A 10.403±9.21 11.406±13.85 10.493±0.00 N/A 3.675±0.00 N/A N/A N/A
ENSDART00000133283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000136051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000014420 ENSDART00000013717 N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A 1.465±0.00 N/A N/A N/A
ENSDART00000028610 N/A N/A N/A N/A N/A N/A 0.105±0.04 0.096±0.02 0.039±0.00 N/A 1.529±0.00 N/A N/A N/A
ENSDART00000133036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000134092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000196361 ENST00000359227 N/A N/A N/A 46.401±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438662 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.535±0.00 N/A N/A N/A N/A
ENST00000588853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003402 ENSMUST00000003493 19.890±3.27 24.225±8.56 23.346±2.81 22.371±4.46 17.485±6.36 35.351±10.89 7.766±2.67 25.515±4.98 23.733±5.64 18.841±3.14 3.831±1.22 45.570±16.36 76.641±23.83 15.938±4.79
ENSMUST00000115331 9.936±0.92 61.719±32.18 14.139±0.11 16.097±2.34 6.149±1.66 8.284±3.08 3.669±1.90 8.767±0.69 13.209±6.39 5.786±1.35 2.916±1.06 17.984±8.89 33.115±10.88 4.666±1.27
ENSMUSG00000003410 ENSMUST00000003501 0.089±0.04 0.707±0.19 0.023±0.01 65.332±49.00 0.050±0.01 0.531±0.07 0.036±0.01 0.269±0.05 0.014±0.01 0.025±0.01 N/A 0.316±0.16 0.159±0.09 0.415±0.13

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