C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003501 Elavl3-201 ENSMUSG00000003410 10090 - 9:22015005-22052023 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000003501
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000003501 0.089±0.04 0.707±0.19 0.023±0.01 65.332±49.00 0.050±0.01 0.531±0.07 0.036±0.01 0.269±0.05 0.014±0.01 0.025±0.01 0.316±0.16 0.159±0.09 0.415±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016O CIL_00016O_0003 CGP 9:22003035-22052023

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0007399 IEA nervous system development
GO:0017091 IDA AU-rich element binding
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000028610 elavl3-001 protein_coding Danio_rerio 0 769
ENSDART00000134787 elavl4-002 protein_coding Danio_rerio 0 521
ENSDART00000110171 elavl4-001 protein_coding Danio_rerio 0 496
ENSDART00000013717 elavl3-002 protein_coding Danio_rerio 0 327
ENSDART00000144139 elavl4-006 processed_transcript Danio_rerio 0 230
ENST00000359227 ELAVL3-001 protein_coding Homo_sapiens 0 1936
ENST00000438662 ELAVL3-002 protein_coding Homo_sapiens 0 1495
ENST00000585656 CTC-398G3.6-001 nonsense_mediated_decay Homo_sapiens 0 396
ENST00000588853 ELAVL3-005 protein_coding Homo_sapiens 0 488
ENST00000592218 ELAVL3-006 processed_transcript Homo_sapiens 0 309

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