C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine-rich repeats and calponin homology (CH) domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000317135 LRCH2-001 ENSG00000130224 9606 - X:115110616-115234072 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000317135
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000317135 1.258±0.00 0.932±0.00 0.154±0.00 1.600±0.00 1.023±0.40 1.420±0.98 0.308±0.03 0.466±0.29 5.042±0.00 1.737±0.00 1.283±0.67 0.979±0.54 1.962±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000178 CIL_000178_0002 CGP X:115003975-115234072

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000136789 Lrch2-001 protein_coding Mus_musculus 0 4349
ENSMUST00000112819 Lrch2-201 protein_coding Mus_musculus 0 4283
ENSMUST00000152838 Lrch2-004 protein_coding Mus_musculus 0 2043
ENSMUST00000134265 Lrch2-003 retained_intron Mus_musculus 0 2034
ENSMUST00000137665 Lrch2-002 protein_coding Mus_musculus 0 1072
ENSMUST00000151730 Lrch2-005 processed_transcript Mus_musculus 0 412

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