C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor A, mitochondrial
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000487519 TFAM-002 ENSG00000108064 9606 + 10:58385022-58399221 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000487519
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000487519 3.596±0.00 4.948±0.00 2.406±0.33 3.396±0.85 3.291±0.33 1.514±1.00 2.900±1.39 3.708±0.58 2.307±0.37 0.938±0.46 4.121±0.29 3.108±0.77 3.971±0.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00018V CIL_00018V_0002 CGP 10:58334975-58399221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IMP sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0006261 TAS DNA-dependent DNA replication
GO:0006356 TAS regulation of transcription from RNA polymerase I promoter
GO:0006390 IMP transcription from mitochondrial promoter
GO:0006391 IDA transcription initiation from mitochondrial promoter
GO:0008301 IDA DNA binding, bending
GO:0010467 TAS gene expression
GO:0031072 IEA heat shock protein binding
GO:0033108 IEA mitochondrial respiratory chain complex assembly
GO:0042645 IDA mitochondrial nucleoid
GO:0044822 IDA poly(A) RNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0070363 IDA mitochondrial light strand promoter sense binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092430 Tfam-001 protein_coding Mus_musculus 0 318
ENSMUST00000121685 Tfam-004 protein_coding Mus_musculus 0 300
ENSMUST00000105432 Tfam-002 protein_coding Mus_musculus 0 300
ENSMUST00000152505 Tfam-005 protein_coding Mus_musculus 0 222
ENSMUST00000145220 Tfam-003 processed_transcript Mus_musculus 0 209
ENSMUST00000024742 Nfkbie-201 protein_coding Mus_musculus 0.000002 60

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