C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001FP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000001470-ENSDARG00000069471 CGP 7955 1:47613228-47648897
GeneTranscriptPositionBiotype
ENSDARG00000001470 (mhc1zea)
major histocompatibility complex class I ZEA 		ENSDART00000048445 (mhc1zea-002) 47617438-47619236 retained_intron
ENSDART00000101143 (mhc1zea-001) 47613228-47619221 protein_coding
ENSDARG00000069471 (mhc1zca)
major histocompatibility complex class I ZCA 		ENSDART00000039459 (mhc1zca-201) 47640917-47648885 protein_coding
ENSDART00000063529 (mhc1zca-001) 47637895-47648897 protein_coding
ENSDARG00000086877 (mhc1zaa)
 ENSDART00000039465 (mhc1zaa-201) 47626631-47632322 lincRNA
ENSDART00000150683 (mhc1zaa-001) 47622717-47632448 lincRNA
CIL_0001FP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000069471-ENSDARG00000036588 CGP 7955 1:47637895-47659103
GeneTranscriptPositionBiotype
ENSDARG00000036588 (mhc1zba)
major histocompatibility complex class I ZBA 		ENSDART00000053153 (mhc1zba-001) 47652531-47659103 protein_coding
ENSDARG00000069471 (mhc1zca)
major histocompatibility complex class I ZCA 		ENSDART00000039459 (mhc1zca-201) 47640917-47648885 protein_coding
ENSDART00000063529 (mhc1zca-001) 47637895-47648897 protein_coding
CIL_0001FP_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000092162-ENSDARG00000074765 CGP 7955 3:1072354-1128564
GeneTranscriptPositionBiotype
ENSDARG00000074765 (mhc1zaa)
major histocompatibility complex class I ZAA 		ENSDART00000105659 (mhc1zaa-001) 1109672-1128564 protein_coding
ENSDART00000134062 (mhc1zaa-002) 1109710-1128538 protein_coding
ENSDARG00000092162 (mhc1zaa)
major histocompatibility complex class I ZAA 		ENSDART00000135595 (mhc1zaa-001) 1089878-1093198 protein_coding
ENSDART00000140333 (mhc1zaa-201) 1089533-1093104 protein_coding
ENSDART00000145890 (mhc1zaa-002) 1072354-1093229 protein_coding
ENSDART00000155936 (mhc1zaa-202) 1075141-1076229 protein_coding
CIL_0001FP_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000204520-ENSG00000204516 CGP 9606 6:31399784-31511124
GeneTranscriptPositionBiotype
ENSG00000199332 (Y_RNA)
Y RNA 		ENST00000362462 (Y_RNA.1-219) 31402152-31402250 misc_RNA
ENSG00000204516 (MICB)
MHC class I polypeptide-related sequence B 		ENST00000252229 (MICB-001) 31498115-31511124 protein_coding
ENST00000399150 (MICB-002) 31498086-31511124 protein_coding
ENST00000494577 (MICB-003) 31505935-31507531 retained_intron
ENST00000538442 (MICB-201) 31494881-31511123 protein_coding
ENSG00000206337 (HCP5)
HLA complex P5 (non-protein coding) 		ENST00000414046 (HCP5-001) 31400702-31465809 sense_overlapping
ENST00000460889 (HCP5-003) 31463185-31463821 sense_overlapping
ENST00000467369 (HCP5-004) 31463185-31477506 sense_overlapping
ENST00000541196 (HCP5-201) 31463182-31465704 sense_overlapping
ENSG00000230174 (LINC01149)
long intergenic non-protein coding RNA 1149 		ENST00000430364 (LINC01149-001) 31441667-31446973 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001FP_0001ENSDARG00000001470ENSDART00000048445ENSDART00000101143ENSDARG00000069471ENSDART00000039459ENSDART00000063529ENSDARG00000086877ENSDART00000039465ENSDART00000150683CIL_0001FP_0002ENSDARG00000036588ENSDART00000053153ENSDARG00000069471ENSDART00000039459ENSDART00000063529CIL_0001FP_0003ENSDARG00000074765ENSDART00000105659ENSDART00000134062ENSDARG00000092162ENSDART00000135595ENSDART00000140333ENSDART00000145890ENSDART00000155936CIL_0001FP_0004ENSG00000199332ENST00000362462ENSG00000204516ENST00000252229ENST00000399150ENST00000494577ENST00000538442ENSG00000206337ENST00000414046ENST00000460889ENST00000467369ENST00000541196ENSG00000230174ENST00000430364
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001FP_0001ENSDARG00000001470ENSDART00000048445ENSDART00000101143ENSDARG00000069471ENSDART00000039459ENSDART00000063529ENSDARG00000086877ENSDART00000039465ENSDART00000150683CIL_0001FP_0002ENSDARG00000036588ENSDART00000053153ENSDARG00000069471ENSDART00000039459ENSDART00000063529CIL_0001FP_0003ENSDARG00000074765ENSDART00000105659ENSDART00000134062ENSDARG00000092162ENSDART00000135595ENSDART00000140333ENSDART00000145890ENSDART00000155936CIL_0001FP_0004ENSG00000199332ENST00000362462ENSG00000204516ENST00000252229ENST00000399150ENST00000494577ENST00000538442ENSG00000206337ENST00000414046ENST00000467369ENST00000541196ENSG00000230174ENST00000430364
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000001470 ENSDART00000048445 N/A N/A N/A 1.596±0.00 N/A N/A 3.781±1.12 N/A N/A N/A 9.490±0.00 N/A N/A N/A
ENSDART00000101143 N/A N/A N/A 5.342±0.89 N/A N/A 5.724±4.00 4.305±3.79 2.338±0.00 N/A 8.326±0.00 N/A N/A N/A
ENSDARG00000069471 ENSDART00000039459 N/A N/A N/A 0.776±0.40 N/A N/A N/A 0.503±0.00 0.245±0.00 N/A N/A N/A N/A N/A
ENSDART00000063529 N/A N/A N/A 0.184±0.07 N/A N/A 7.148±4.64 2.665±0.80 N/A N/A 47.337±0.00 N/A N/A N/A
ENSDARG00000086877 ENSDART00000039465 N/A N/A N/A 30.158±13.52 N/A N/A 12.510±3.49 5.999±0.00 1.678±0.00 N/A 25.335±0.00 N/A N/A N/A
ENSDART00000150683 N/A N/A N/A N/A N/A N/A 2.962±0.00 1.980±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000036588 ENSDART00000053153 N/A N/A N/A 39.508±23.74 N/A N/A 421.015±294.61 251.969±115.65 4.275±0.00 N/A 10.436±0.00 N/A N/A N/A
ENSDARG00000069471 ENSDART00000039459 N/A N/A N/A 0.776±0.40 N/A N/A N/A 0.503±0.00 0.245±0.00 N/A N/A N/A N/A N/A
ENSDART00000063529 N/A N/A N/A 0.184±0.07 N/A N/A 7.148±4.64 2.665±0.80 N/A N/A 47.337±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000074765 ENSDART00000105659 N/A N/A N/A 0.410±0.21 N/A N/A 1.030±0.75 2.059±1.82 N/A N/A 0.105±0.00 N/A N/A N/A
ENSDART00000134062 N/A N/A N/A 0.238±0.15 N/A N/A 0.579±0.33 1.479±0.00 0.078±0.00 N/A 0.264±0.00 N/A N/A N/A
ENSDARG00000092162 ENSDART00000135595 N/A N/A N/A 0.109±0.00 N/A N/A 2.134±0.00 N/A 0.135±0.00 N/A N/A N/A N/A N/A
ENSDART00000140333 N/A N/A N/A 0.462±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000145890 N/A N/A N/A 0.508±0.13 N/A N/A N/A N/A N/A N/A 0.981±0.00 N/A N/A N/A
ENSDART00000155936 N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000199332 ENST00000362462 0.191±0.00 0.752±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.933±0.00 N/A 1.786±0.00
ENSG00000204516 ENST00000252229 0.597±0.00 N/A N/A N/A N/A 0.609±0.00 N/A 0.323±0.00 N/A N/A N/A 2.128±0.54 1.256±1.04 0.751±0.00
ENST00000399150 N/A N/A N/A N/A N/A N/A 0.138±0.00 N/A N/A N/A 0.158±0.03 0.592±0.09 N/A N/A
ENST00000494577 N/A N/A 0.166±0.00 0.195±0.00 0.868±0.07 0.905±0.06 0.093±0.00 0.872±0.71 N/A 0.720±0.00 N/A 1.481±0.73 N/A 0.459±0.00
ENST00000538442 0.383±0.00 1.659±0.00 N/A 0.106±0.00 0.482±0.00 0.633±0.00 0.268±0.00 N/A 0.394±0.29 2.365±0.00 N/A 0.541±0.26 0.638±0.05 0.455±0.00
ENSG00000206337 ENST00000414046 1.108±0.00 N/A N/A N/A 2.638±0.00 N/A 0.590±0.00 N/A 0.890±0.00 5.042±1.35 N/A 2.368±1.35 N/A N/A
ENST00000460889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467369 N/A N/A 1.394±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541196 4.960±0.00 8.527±0.00 N/A 0.606±0.18 3.018±0.78 3.991±0.45 0.961±0.53 4.429±2.64 0.983±0.02 11.596±8.20 0.568±0.21 12.166±14.32 2.239±0.40 2.213±0.22
ENSG00000230174 ENST00000430364 0.017±0.00 0.051±0.00 N/A 0.030±0.00 N/A 0.005±0.00 0.049±0.00 0.090±0.00 0.005±0.00 0.019±0.00 N/A 0.015±0.00 N/A 0.431±0.37

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