C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001HT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000027572-ENSDARG00000078733 CGP 7955 1:31160640-31253329
GeneTranscriptPositionBiotype
ENSDARG00000027572 (as3mt)
arsenic (+3 oxidation state) methyltransferase 		ENSDART00000057879 (as3mt-001) 31160640-31176847 protein_coding
ENSDART00000144957 (as3mt-002) 31160641-31176847 processed_transcript
ENSDARG00000078733 (CNNM2 (2 of 2))
cyclin and CBS domain divalent metal cation transport mediator 2 		ENSDART00000112333 (CNNM2 (2 of 2)-201) 31179273-31253329 protein_coding
ENSDARG00000084717 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000120117 (5S_rRNA.794-201) 31164296-31164415 rRNA

Danio rerio Ensembl (Zv9)

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CIL_0001HT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000214435-ENSG00000148842 CGP 9606 10:102869516-103090221
GeneTranscriptPositionBiotype
ENSG00000076685 (NT5C2)
5'-nucleotidase, cytosolic II 		ENST00000343289 (NT5C2-201) 103088018-103193306 protein_coding
ENST00000369857 (NT5C2-012) 103088917-103193272 processed_transcript
ENST00000404739 (NT5C2-001) 103088017-103174982 protein_coding
ENST00000421281 (NT5C2-009) 103089841-103094368 protein_coding
ENST00000452156 (NT5C2-002) 103097291-103193272 nonsense_mediated_decay
ENST00000458345 (NT5C2-005) 103097972-103106650 protein_coding
ENST00000461461 (NT5C2-003) 103097308-103193298 nonsense_mediated_decay
ENST00000467380 (NT5C2-011) 103169284-103181320 processed_transcript
ENST00000469228 (NT5C2-006) 103093732-103094535 retained_intron
ENST00000470228 (NT5C2-007) 103098392-103105759 retained_intron
ENST00000470299 (NT5C2-010) 103111745-103193298 protein_coding
ENST00000481549 (NT5C2-008) 103100868-103106687 processed_transcript
ENST00000487810 (NT5C2-004) 103099926-103140192 processed_transcript
ENST00000552185 (NT5C2-013) 103098971-103106684 nonsense_mediated_decay
ENSG00000214435 (AS3MT)
arsenite methyltransferase 		ENST00000369880 (AS3MT-001) 102869516-102901899 protein_coding
ENST00000615257 (AS3MT-201) 102869516-102901894 protein_coding
ENSG00000235266 (RP11-753C18.8)
 ENST00000438729 (RP11-753C18.8-001) 102887874-102888188 processed_pseudogene
ENSG00000270316 (C10orf32-ASMT)
C10orf32-ASMT readthrough (NMD candidate) 		ENST00000299353 (C10orf32-ASMT-001) 102854272-102901899 nonsense_mediated_decay
ENSG00000272912 (RP11-724N1.1)
 ENST00000610034 (RP11-724N1.1-001) 102914585-102915404 lincRNA
ENSG00000278498 (uc_338)
TUC338 		ENST00000616802 (uc_338.1-234) 103027336-103027498 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0001HT_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000003559-ENSMUSG00000064105 CGP 10090 19:46707443-46878795
GeneTranscriptPositionBiotype
ENSMUSG00000003559 (As3mt)
arsenic (+3 oxidation state) methyltransferase 		ENSMUST00000003655 (As3mt-201) 46707443-46741095 protein_coding
ENSMUSG00000064105 (Cnnm2)
cyclin M2 		ENSMUST00000077666 (Cnnm2-201) 46761596-46878795 protein_coding
ENSMUST00000099373 (Cnnm2-202) 46761596-46878795 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HT_0001ENSDARG00000027572ENSDART00000057879ENSDART00000144957ENSDARG00000078733ENSDART00000112333ENSDARG00000084717ENSDART00000120117CIL_0001HT_0002ENSG00000076685ENST00000343289ENST00000369857ENST00000404739ENST00000421281ENST00000452156ENST00000458345ENST00000461461ENST00000467380ENST00000469228ENST00000470228ENST00000470299ENST00000481549ENST00000487810ENST00000552185ENSG00000214435ENST00000369880ENST00000615257ENSG00000235266ENST00000438729ENSG00000270316ENST00000299353ENSG00000272912ENST00000610034ENSG00000278498ENST00000616802CIL_0001HT_0003ENSMUSG00000003559ENSMUST00000003655ENSMUSG00000064105ENSMUST00000077666ENSMUST00000099373
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HT_0001ENSDARG00000027572ENSDART00000057879ENSDART00000144957ENSDARG00000078733ENSDART00000112333ENSDARG00000084717ENSDART00000120117CIL_0001HT_0002ENSG00000076685ENST00000343289ENST00000369857ENST00000404739ENST00000421281ENST00000470228ENSG00000214435ENST00000369880ENST00000615257ENSG00000235266ENST00000438729ENSG00000270316ENST00000299353ENSG00000272912ENST00000610034ENSG00000278498ENST00000616802CIL_0001HT_0003ENSMUSG00000003559ENSMUST00000003655ENSMUSG00000064105ENSMUST00000077666ENSMUST00000099373
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000027572 ENSDART00000057879 N/A N/A N/A 2.478±1.03 N/A N/A 5.308±3.22 14.764±0.00 6.122±0.00 N/A 5.029±0.00 N/A N/A N/A
ENSDART00000144957 N/A N/A N/A 0.369±0.11 N/A N/A 1.373±0.00 N/A 2.637±0.00 N/A N/A N/A N/A N/A
ENSDARG00000078733 ENSDART00000112333 N/A N/A N/A 1.697±0.91 N/A N/A 0.251±0.09 0.198±0.05 0.032±0.00 N/A 0.652±0.00 N/A N/A N/A
ENSDARG00000084717 ENSDART00000120117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.956±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000076685 ENST00000343289 N/A N/A 5.791±0.00 6.246±1.12 N/A 1.721±0.00 3.158±0.00 4.726±0.00 N/A N/A N/A 5.830±0.57 1.964±0.00 8.502±0.00
ENST00000369857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.337±0.00 N/A N/A N/A
ENST00000404739 2.193±0.00 4.077±0.00 N/A 1.935±0.00 7.599±3.42 5.812±2.77 7.731±0.00 5.931±3.36 1.966±0.20 4.317±1.40 N/A 10.718±1.49 9.698±2.94 7.002±2.76
ENST00000421281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 84.576±0.00
ENST00000452156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470228 N/A N/A N/A N/A N/A N/A 3.308±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000470299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214435 ENST00000369880 N/A 1.936±0.00 N/A 1.748±0.00 2.142±1.75 N/A 2.098±1.23 2.932±2.14 10.524±0.00 N/A 1.108±0.00 2.149±0.00 N/A 2.368±1.18
ENST00000615257 N/A N/A 3.020±0.00 3.466±1.01 2.510±1.62 2.719±1.40 4.029±1.42 4.589±0.00 3.624±1.80 1.627±0.00 0.437±0.00 4.146±3.40 N/A 3.616±1.11
ENSG00000235266 ENST00000438729 N/A N/A N/A 0.033±0.00 N/A N/A N/A N/A N/A 0.028±0.00 N/A N/A 0.069±0.00 0.130±0.00
ENSG00000270316 ENST00000299353 0.983±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.542±0.00 N/A N/A N/A
ENSG00000272912 ENST00000610034 N/A 0.038±0.00 N/A 0.158±0.00 0.109±0.00 0.049±0.04 0.012±0.00 0.194±0.00 0.032±0.00 0.168±0.00 0.011±0.00 0.039±0.00 N/A 0.197±0.09
ENSG00000278498 ENST00000616802 0.296±0.00 N/A N/A 0.172±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.286±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003559 ENSMUST00000003655 4.605±0.73 10.644±2.11 9.373±0.91 3.211±1.53 3.450±1.05 7.370±1.57 12.402±1.10 19.939±2.89 11.460±5.89 6.373±1.16 12.001±1.53 8.465±5.72 21.184±6.29 4.381±1.22
ENSMUSG00000064105 ENSMUST00000077666 2.852±0.00 1.866±0.00 2.174±0.00 0.889±0.00 1.271±0.44 1.115±0.48 0.179±0.00 3.685±0.98 0.673±0.36 1.736±0.68 0.214±0.04 2.175±0.75 2.375±1.49 0.352±0.18
ENSMUST00000099373 8.430±4.24 12.168±2.65 2.855±0.00 3.833±0.42 6.796±1.99 1.778±0.60 1.132±0.18 4.520±0.78 0.983±0.53 1.636±0.99 0.573±0.15 5.585±2.40 4.494±4.39 0.591±0.13

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