C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000438729 RP11-753C18.8-001 ENSG00000235266 9606 - 10:102887874-102888188 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLungPlacentaTestisENST00000438729
Transcript ID Brain Lung Placenta Testis
ENST00000438729 0.033±0.00 0.028±0.00 0.069±0.00 0.130±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MQ CIL_0008MQ_0001 VISTA 10:102469546-103070739
CIL_00065V CIL_00065V_0001 CGP 10:102854272-102901899
CIL_0001HT CIL_0001HT_0002 CGP 10:102869516-103090221

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121451 Gm12005-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000118297 Gm13196-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000188151 Rpl22-201 protein_coding Mus_musculus 0 270
ENSMUST00000139685 Rpl22-002 protein_coding Mus_musculus 0 270
ENSMUST00000103191 Rpl22-001 protein_coding Mus_musculus 0 270
ENSMUST00000142735 Rpl22-003 processed_transcript Mus_musculus 0 270
ENSMUST00000118652 Rpl22-ps1-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000180176 Gm9457-201 processed_pseudogene Mus_musculus 0 209
ENSMUST00000150485 Rpl22-006 processed_transcript Mus_musculus 4.99997e-41 171
ENSMUST00000156445 Rpl22-007 processed_transcript Mus_musculus 2e-29 132

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