C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001JJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000018806-ENSDARG00000075227 CGP 7955 15:42362040-42490698
GeneTranscriptPositionBiotype
ENSDARG00000018806 (ctsc)
cathepsin C 		ENSDART00000022838 (ctsc-201) 42362040-42383557 protein_coding
ENSDARG00000075227 (GRM5 (2 of 2))
glutamate receptor, metabotropic 5 		ENSDART00000108898 (GRM5 (2 of 2)-201) 42413271-42490698 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001JJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000109861-ENSG00000168959 CGP 9606 11:88293592-89065945
GeneTranscriptPositionBiotype
ENSG00000109861 (CTSC)
cathepsin C 		ENST00000227266 (CTSC-001) 88293592-88337787 protein_coding
ENST00000393301 (CTSC-008) 88326365-88337700 processed_transcript
ENST00000524463 (CTSC-002) 88320811-88337761 protein_coding
ENST00000527018 (CTSC-004) 88296159-88337749 protein_coding
ENST00000528020 (CTSC-009) 88326086-88328198 protein_coding
ENST00000529974 (CTSC-003) 88326117-88337733 protein_coding
ENST00000533865 (CTSC-005) 88309284-88337740 processed_transcript
ENST00000533897 (CTSC-010) 88293788-88299755 retained_intron
ENST00000534131 (CTSC-007) 88334736-88337736 retained_intron
ENSG00000168959 (GRM5)
glutamate receptor, metabotropic 5 		ENST00000305432 (GRM5-001) 88507810-89048022 protein_coding
ENST00000305447 (GRM5-005) 88507810-89048022 protein_coding
ENST00000393294 (GRM5-002) 88984702-89065945 protein_coding
ENST00000449371 (GRM5-003) 88911936-89047370 protein_coding
ENST00000455756 (GRM5-201) 88504576-89063648 protein_coding
ENSG00000207113 (RNU6-16P)
RNA, U6 small nuclear 16, pseudogene 		ENST00000384385 (RNU6-16P-201) 88612805-88612911 snRNA
ENSG00000249489 (GAPDHP70)
glyceraldehyde 3 phosphate dehydrogenase pseudogene 70 		ENST00000515281 (GAPDHP70-001) 88408179-88409223 processed_pseudogene
ENSG00000255082 (GRM5-AS1)
GRM5 antisense RNA 1 		ENST00000526448 (GRM5-AS1-001) 88504576-88524054 antisense
ENST00000531994 (GRM5-AS1-002) 88511748-88512361 antisense

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JJ_0001ENSDARG00000018806ENSDART00000022838ENSDARG00000075227ENSDART00000108898CIL_0001JJ_0002ENSG00000109861ENST00000227266ENST00000393301ENST00000524463ENST00000527018ENST00000528020ENST00000529974ENST00000533865ENST00000533897ENST00000534131ENSG00000168959ENST00000305432ENST00000305447ENST00000393294ENST00000449371ENST00000455756ENSG00000207113ENST00000384385ENSG00000249489ENST00000515281ENSG00000255082ENST00000526448ENST00000531994
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JJ_0001ENSDARG00000018806ENSDART00000022838ENSDARG00000075227ENSDART00000108898CIL_0001JJ_0002ENSG00000109861ENST00000227266ENST00000524463ENST00000533897ENSG00000168959ENST00000305432ENST00000305447ENST00000393294ENSG00000207113ENST00000384385ENSG00000249489ENST00000515281ENSG00000255082ENST00000526448
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000018806 ENSDART00000022838 N/A N/A N/A 5.660±0.76 N/A N/A 38.472±15.03 50.380±18.82 2.267±0.00 N/A 14.807±0.00 N/A N/A N/A
ENSDARG00000075227 ENSDART00000108898 N/A N/A N/A 0.046±0.00 N/A N/A 0.018±0.00 0.021±0.00 N/A N/A 0.055±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109861 ENST00000227266 14.204±0.00 33.728±0.00 9.895±0.00 5.926±0.00 17.432±3.73 16.003±2.14 5.958±4.95 38.302±34.13 14.167±0.35 57.038±14.17 3.600±2.42 13.420±4.35 107.592±23.95 14.088±0.00
ENST00000393301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524463 1.131±0.00 2.629±0.00 0.787±0.00 0.506±0.41 1.408±0.12 1.838±0.28 0.299±0.18 0.319±0.00 0.925±0.00 N/A 0.396±0.00 1.054±0.02 N/A 0.983±0.51
ENST00000527018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533897 N/A N/A N/A N/A 1.827±0.00 1.549±0.00 0.231±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000534131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000168959 ENST00000305432 N/A N/A N/A 2.542±0.00 N/A N/A 0.005±0.00 0.109±0.00 N/A 0.074±0.00 N/A N/A N/A 0.288±0.07
ENST00000305447 N/A N/A N/A 6.425±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.185±0.00
ENST00000393294 N/A N/A N/A N/A N/A 0.011±0.00 0.006±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000449371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000207113 ENST00000384385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.475±0.00 N/A
ENSG00000249489 ENST00000515281 0.062±0.00 0.033±0.00 0.436±0.00 0.125±0.00 0.138±0.00 0.032±0.00 0.100±0.00 0.017±0.00 0.014±0.00 0.242±0.23 0.772±0.00 0.039±0.00 0.055±0.00 0.104±0.00
ENSG00000255082 ENST00000526448 0.010±0.00 N/A N/A 4.905±1.42 0.014±0.00 0.002±0.00 N/A 0.104±0.00 0.036±0.00 0.103±0.00 N/A 0.026±0.02 0.012±0.00 0.100±0.03
ENST00000531994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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