C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0001L1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000186628-ENSG00000156232 CGP 9606 15:82755362-82836108
GeneTranscriptPositionBiotype
ENSG00000156232 (WHAMM)
WAS protein homolog associated with actin, golgi membranes and microtubules
ENST00000286760 (WHAMM-001) 82809628-82836108 protein_coding
ENST00000560964 (WHAMM-002) 82817920-82826794 retained_intron
ENSG00000186628 (FSD2)
fibronectin type III and SPRY domain containing 2
ENST00000334574 (FSD2-002) 82755362-82806069 protein_coding
ENST00000541889 (FSD2-001) 82759274-82806054 protein_coding
ENST00000561368 (FSD2-003) 82787088-82806070 protein_coding
ENSG00000250988 (SNHG21)
small nucleolar RNA host gene 21 (non-protein coding)
ENST00000544685 (SNHG21-001) 82750564-82754937 antisense
ENST00000558174 (SNHG21-004) 82750583-82757206 antisense
ENST00000558687 (SNHG21-002) 82750566-82755037 antisense
ENST00000559366 (SNHG21-005) 82750584-82757206 antisense
ENST00000561107 (SNHG21-003) 82750572-82757204 antisense
ENSG00000252690 (SCARNA15)
small Cajal body-specific RNA 15
ENST00000607520 (SCARNA15-001) 82752884-82757208 retained_intron
CIL_0001L1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038663-ENSMUSG00000045795 CGP 10090 7:81533308-81596836
GeneTranscriptPositionBiotype
ENSMUSG00000038663 (Fsd2)
fibronectin type III and SPRY domain containing 2
ENSMUST00000042318 (Fsd2-201) 81533308-81566944 protein_coding
ENSMUSG00000045795 (Whamm)
WAS protein homolog associated with actin, golgi membranes and microtubules
ENSMUST00000165460 (Whamm-201) 81571292-81596836 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001L1_0001ENSG00000156232ENST00000286760ENST00000560964ENSG00000186628ENST00000334574ENST00000541889ENST00000561368ENSG00000250988ENST00000544685ENST00000558174ENST00000558687ENST00000559366ENST00000561107ENSG00000252690ENST00000607520CIL_0001L1_0002ENSMUSG00000038663ENSMUST00000042318ENSMUSG00000045795ENSMUST00000165460
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001L1_0001ENSG00000156232ENST00000286760ENST00000560964ENSG00000186628ENST00000334574ENST00000541889ENSG00000250988ENST00000544685ENST00000558174ENST00000558687ENST00000559366ENSG00000252690ENST00000607520CIL_0001L1_0002ENSMUSG00000038663ENSMUST00000042318ENSMUSG00000045795ENSMUST00000165460
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000156232 ENST00000286760 3.526±0.00 3.890±0.00 0.887±0.00 2.152±1.05 2.293±0.94 2.389±0.00 1.209±0.51 1.649±1.04 1.976±0.60 2.703±1.03 4.969±3.68 1.781±0.60 1.914±1.32 2.056±0.50
ENST00000560964 N/A N/A N/A N/A 1.509±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000186628 ENST00000334574 N/A N/A 0.042±0.00 N/A N/A N/A 0.261±0.00 N/A 0.049±0.00 0.057±0.00 N/A N/A 0.043±0.01 N/A
ENST00000541889 N/A N/A N/A N/A 0.474±0.00 N/A 6.556±4.67 N/A N/A N/A 2.132±0.20 0.083±0.00 N/A N/A
ENST00000561368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000250988 ENST00000544685 0.693±0.00 3.149±0.00 N/A 2.338±0.97 1.964±0.14 1.046±0.13 N/A 1.413±0.00 0.917±0.48 0.705±0.00 N/A 1.995±0.60 0.359±0.05 2.744±0.61
ENST00000558174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.119±0.14 N/A N/A
ENST00000558687 N/A N/A 0.754±0.00 N/A N/A N/A N/A N/A 0.237±0.00 0.918±0.00 N/A N/A N/A N/A
ENST00000559366 0.529±0.00 N/A N/A 1.378±0.00 N/A 0.824±0.00 N/A 0.840±0.00 N/A 0.809±0.00 N/A N/A N/A 0.939±0.00
ENST00000561107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000252690 ENST00000607520 N/A N/A 0.080±0.00 N/A N/A N/A N/A N/A 0.069±0.05 0.089±0.00 N/A 0.099±0.02 0.041±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038663 ENSMUST00000042318 6.019±3.95 0.702±0.20 0.169±0.00 0.061±0.00 8.371±4.80 0.051±0.03 58.413±7.30 0.259±0.10 0.057±0.03 1.325±0.62 46.259±12.44 0.555±0.20 0.058±0.04 0.184±0.07
ENSMUSG00000045795 ENSMUST00000165460 7.449±1.13 15.988±6.72 7.223±0.50 5.348±2.43 7.582±4.10 12.102±4.18 2.659±0.83 3.009±1.69 10.257±5.02 7.556±2.91 2.571±0.35 9.998±3.11 8.950±3.87 11.062±2.90

Loading