C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WAS protein homolog associated with actin, golgi membranes and microtubules
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000286760 WHAMM-001 ENSG00000156232 9606 + 15:82809628-82836108 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000286760
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000286760 3.526±0.00 3.890±0.00 0.887±0.00 2.152±1.05 2.293±0.94 2.389±0.00 1.209±0.51 1.649±1.04 1.976±0.60 2.703±1.03 4.969±3.68 1.781±0.60 1.914±1.32 2.056±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001L1 CIL_0001L1_0001 CGP 15:82755362-82836108
CIL_00026B CIL_00026B_0001 CGP 15:82809628-82986153

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IDA Golgi membrane
GO:0000166 IEA nucleotide binding
GO:0003779 IEA actin binding
GO:0006888 IDA ER to Golgi vesicle-mediated transport
GO:0007015 IDA actin filament organization
GO:0008017 IDA microtubule binding
GO:0017049 IDA GTP-Rho binding
GO:0030032 IMP lamellipodium assembly
GO:0031410 IEA cytoplasmic vesicle
GO:0033116 IDA endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0048041 IMP focal adhesion assembly
GO:0051127 IDA positive regulation of actin nucleation
GO:0071933 IDA Arp2/3 complex binding
GO:0090527 IMP actin filament reorganization
GO:0097320 IDA membrane tubulation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078259 Nsl1-001 protein_coding Mus_musculus 0.0000000000004 82

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