C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WAS protein homolog associated with actin, golgi membranes and microtubules
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165460 Whamm-201 ENSMUSG00000045795 10090 + 7:81571292-81596836 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000165460
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000165460 7.449±1.13 15.988±6.72 7.223±0.50 5.348±2.43 7.582±4.10 12.102±4.18 2.659±0.83 3.009±1.69 10.257±5.02 7.556±2.91 2.571±0.35 9.998±3.11 8.950±3.87 11.062±2.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001L1 CIL_0001L1_0002 CGP 7:81533308-81596836
CIL_00026B CIL_00026B_0002 CGP 7:81571292-81706925

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 ISS Golgi membrane
GO:0003779 IEA actin binding
GO:0006888 IMP ER to Golgi vesicle-mediated transport
GO:0007015 IEA actin filament organization
GO:0008017 ISS microtubule binding
GO:0017049 ISS GTP-Rho binding
GO:0030032 IEA lamellipodium assembly
GO:0031410 IEA cytoplasmic vesicle
GO:0033116 ISS endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0048041 IEA focal adhesion assembly
GO:0051127 ISS positive regulation of actin nucleation
GO:0071933 ISS Arp2/3 complex binding
GO:0090527 ISS actin filament reorganization
GO:0097320 ISS membrane tubulation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399971 CTD-3092A11.1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 680
ENST00000454486 RP11-632K20.7-001 transcribed_processed_pseudogene Homo_sapiens 0 654
ENST00000561563 RP11-632K20.7-002 processed_transcript Homo_sapiens 0 401
ENST00000564702 CTD-3092A11.1-002 retained_intron Homo_sapiens 0 246
ENST00000604846 RP11-632K20.7-004 processed_transcript Homo_sapiens 0 204
ENST00000611636 WHAMMP3-002 transcribed_unprocessed_pseudogene Homo_sapiens 0 830
ENST00000621139 WHAMMP3-001 processed_transcript Homo_sapiens 0 207
ENST00000622062 WHAMMP3-004 retained_intron Homo_sapiens 0 425

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