C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001SI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000076169-ENSDARG00000078916 CGP 7955 21:20695470-20733029
GeneTranscriptPositionBiotype
ENSDARG00000076169 (pold3)
polymerase (DNA-directed), delta 3, accessory subunit 		ENSDART00000101700 (pold3-001) 20695470-20706501 protein_coding
ENSDART00000151306 (pold3-003) 20695570-20696663 retained_intron
ENSDART00000151781 (pold3-004) 20702506-20706301 retained_intron
ENSDARG00000078916 (chrdl2)
chordin-like 2 		ENSDART00000113734 (chrdl2-001) 20723685-20733029 protein_coding
CIL_0001SI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000077514-ENSG00000054938 CGP 9606 11:74493851-74731385
GeneTranscriptPositionBiotype
ENSG00000054938 (CHRDL2)
chordin-like 2 		ENST00000263671 (CHRDL2-001) 74696429-74731175 protein_coding
ENST00000376324 (CHRDL2-007) 74696429-74719303 nonsense_mediated_decay
ENST00000376332 (CHRDL2-002) 74696429-74731385 protein_coding
ENST00000525413 (CHRDL2-009) 74696429-74704635 protein_coding
ENST00000528471 (CHRDL2-006) 74702794-74719303 nonsense_mediated_decay
ENST00000528789 (CHRDL2-003) 74702794-74731182 protein_coding
ENST00000529912 (CHRDL2-010) 74696429-74697694 protein_coding
ENST00000534159 (CHRDL2-004) 74700922-74731153 processed_transcript
ENST00000534276 (CHRDL2-005) 74702794-74719303 nonsense_mediated_decay
ENST00000622063 (CHRDL2-201) 74696509-74731385 protein_coding
ENSG00000077514 (POLD3)
polymerase (DNA-directed), delta 3, accessory subunit 		ENST00000263681 (POLD3-001) 74592530-74643057 protein_coding
ENST00000524752 (POLD3-007) 74625504-74669117 protein_coding
ENST00000527458 (POLD3-002) 74592605-74641114 protein_coding
ENST00000528481 (POLD3-010) 74493851-74618594 protein_coding
ENST00000530163 (POLD3-008) 74628863-74640965 retained_intron
ENST00000530511 (POLD3-005) 74592644-74618770 protein_coding
ENST00000531615 (POLD3-006) 74604563-74618675 protein_coding
ENST00000532497 (POLD3-003) 74592605-74641114 protein_coding
ENST00000532784 (POLD3-004) 74592556-74595502 processed_transcript
ENST00000532954 (POLD3-009) 74638614-74641062 protein_coding
ENSG00000223202 (RN7SKP297)
RNA, 7SK small nuclear pseudogene 297 		ENST00000411270 (RN7SKP297-201) 74685224-74685505 misc_RNA
ENSG00000254500 (RANP3)
RAN, member RAS oncogene family pseudogene 3 		ENST00000530970 (RANP3-001) 74652636-74652911 processed_pseudogene
ENSG00000254837 (AP001372.2)
 ENST00000526036 (AP001372.2-001) 74493366-74498533 lincRNA
ENST00000612462 (AP001372.2-201) 74497188-74498084 lincRNA
ENSG00000279353 (RP11-864N7.4)
 ENST00000624759 (RP11-864N7.4-001) 74698231-74699658 TEC

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001SI_0001ENSDARG00000076169ENSDART00000101700ENSDART00000151306ENSDART00000151781ENSDARG00000078916ENSDART00000113734CIL_0001SI_0002ENSG00000054938ENST00000263671ENST00000376324ENST00000376332ENST00000525413ENST00000528471ENST00000528789ENST00000529912ENST00000534159ENST00000534276ENST00000622063ENSG00000077514ENST00000263681ENST00000524752ENST00000527458ENST00000528481ENST00000530163ENST00000530511ENST00000531615ENST00000532497ENST00000532784ENST00000532954ENSG00000223202ENST00000411270ENSG00000254500ENST00000530970ENSG00000254837ENST00000526036ENST00000612462ENSG00000279353ENST00000624759
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001SI_0001ENSDARG00000076169ENSDART00000101700ENSDART00000151306ENSDART00000151781ENSDARG00000078916ENSDART00000113734CIL_0001SI_0002ENSG00000054938ENST00000263671ENST00000376324ENST00000376332ENST00000525413ENST00000528789ENST00000529912ENST00000534159ENST00000622063ENSG00000077514ENST00000263681ENST00000528481ENST00000530163ENST00000532497ENSG00000223202ENST00000411270ENSG00000254500ENST00000530970ENSG00000254837ENST00000526036ENST00000612462ENSG00000279353ENST00000624759
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000076169 ENSDART00000101700 N/A N/A N/A 2.229±0.00 N/A N/A 1.439±1.43 7.136±2.96 0.531±0.00 N/A 0.798±0.00 N/A N/A N/A
ENSDART00000151306 N/A N/A N/A 3.536±0.00 N/A N/A N/A N/A 0.831±0.00 N/A 0.927±0.00 N/A N/A N/A
ENSDART00000151781 N/A N/A N/A 2.980±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000078916 ENSDART00000113734 N/A N/A N/A 0.313±0.10 N/A N/A 0.552±0.55 0.818±0.37 N/A N/A 0.403±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000054938 ENST00000263671 N/A N/A N/A N/A N/A 12.740±0.00 0.591±0.00 0.445±0.00 N/A N/A 0.995±0.00 1.889±1.23 0.793±0.33 3.144±2.34
ENST00000376324 N/A 0.146±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000376332 0.020±0.00 0.299±0.00 N/A N/A N/A 12.081±0.00 1.105±0.00 N/A N/A 0.126±0.00 N/A 2.485±2.07 0.539±0.00 1.362±0.76
ENST00000525413 N/A N/A N/A 0.088±0.00 N/A N/A N/A 0.471±0.00 0.386±0.00 N/A N/A 1.035±0.00 0.336±0.00 2.237±1.38
ENST00000528471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528789 N/A N/A N/A N/A N/A 0.381±0.00 0.556±0.00 N/A 0.104±0.00 N/A N/A 0.574±0.00 0.611±0.26 N/A
ENST00000529912 0.175±0.00 2.372±0.00 N/A N/A 0.221±0.00 N/A 0.445±0.00 0.353±0.01 9.540±9.37 0.107±0.00 N/A N/A N/A N/A
ENST00000534159 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.077±0.00 N/A N/A N/A N/A
ENST00000534276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622063 N/A N/A N/A 0.159±0.00 0.274±0.00 N/A N/A N/A N/A N/A N/A 1.630±1.17 0.392±0.00 1.968±0.00
ENSG00000077514 ENST00000263681 3.856±0.00 1.196±0.00 1.220±0.00 1.567±0.15 1.549±0.32 1.221±0.30 1.207±0.00 2.445±0.00 1.313±0.25 2.999±0.63 1.168±1.05 6.255±3.01 3.027±0.61 8.267±1.09
ENST00000524752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528481 N/A N/A N/A N/A N/A N/A N/A 1.695±0.00 N/A N/A N/A N/A N/A N/A
ENST00000530163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.826±0.00 N/A N/A
ENST00000530511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.386±0.00 11.284±0.00
ENST00000532784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532954 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223202 ENST00000411270 N/A N/A 0.299±0.00 N/A N/A 1.083±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254500 ENST00000530970 N/A 0.253±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254837 ENST00000526036 N/A 0.879±0.00 0.681±0.00 2.316±0.25 1.070±0.00 0.640±0.00 0.727±0.50 1.716±0.00 1.057±0.00 1.422±0.00 0.090±0.00 3.614±0.77 1.765±0.34 3.465±0.00
ENST00000612462 N/A N/A N/A N/A 1.637±0.00 1.509±0.00 N/A 2.640±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000279353 ENST00000624759 N/A 0.012±0.00 N/A 0.057±0.00 0.166±0.14 0.542±0.00 0.069±0.00 0.038±0.00 0.062±0.04 0.023±0.00 N/A 0.253±0.07 N/A 0.119±0.03

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