C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chordin-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263671 CHRDL2-001 ENSG00000054938 9606 - 11:74696429-74731175 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyMuscleOvaryPlacentaTestisENST00000263671
Transcript ID Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000263671 12.740±0.00 0.591±0.00 0.445±0.00 0.995±0.00 1.889±1.23 0.793±0.33 3.144±2.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SI CIL_0001SI_0002 CGP 11:74493851-74731385

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001503 IEA ossification
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0005737 IEA cytoplasm
GO:0030154 IEA cell differentiation
GO:0051216 IEA cartilage development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032977 Chrdl2-001 protein_coding Mus_musculus 0 758
ENSMUST00000107084 Chrdl2-002 protein_coding Mus_musculus 0 699
ENSMUST00000183538 St6galnac6-002 nonsense_mediated_decay Mus_musculus 0.0001 53
ENSMUST00000095044 St6galnac6-001 protein_coding Mus_musculus 0.0001 53
ENSMUST00000095045 St6galnac6-202 protein_coding Mus_musculus 0.0001 53

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