C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001VN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000035377-ENSDARG00000088753 CGP 7955 5:41143150-41275801
GeneTranscriptPositionBiotype
ENSDARG00000035377 (fgf5)
fibroblast growth factor 5 		ENSDART00000051256 (fgf5-001) 41143150-41162839 protein_coding
ENSDARG00000060526 (bmp3)
bone morphogenetic protein 3 		ENSDART00000085388 (bmp3-001) 41273227-41279432 protein_coding
ENSDARG00000088753 (C5H4orf22)
chromosome 4 open reading frame 22 		ENSDART00000097872 (C5H4orf22-002) 41169278-41269688 protein_coding
ENSDART00000131245 (C5H4orf22-001) 41169256-41275801 protein_coding
CIL_0001VN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138675-ENSG00000197826 CGP 9606 4:80266599-80963756
GeneTranscriptPositionBiotype
ENSG00000138675 (FGF5)
fibroblast growth factor 5 		ENST00000312465 (FGF5-001) 80266599-80290194 protein_coding
ENST00000380628 (FGF5-003) 80266825-80268518 processed_transcript
ENST00000456523 (FGF5-002) 80266639-80291017 protein_coding
ENST00000503413 (FGF5-004) 80268265-80288958 processed_transcript
ENST00000507780 (FGF5-005) 80266942-80336680 nonsense_mediated_decay
ENSG00000197826 (C4orf22)
chromosome 4 open reading frame 22 		ENST00000358105 (C4orf22-001) 80335720-80963756 protein_coding
ENST00000502497 (C4orf22-006) 80335743-80790507 processed_transcript
ENST00000503883 (C4orf22-007) 80335781-80583291 processed_transcript
ENST00000508314 (C4orf22-008) 80870049-80963697 processed_transcript
ENST00000508675 (C4orf22-003) 80335769-80963612 protein_coding
ENST00000512931 (C4orf22-005) 80335742-80649150 processed_transcript
ENST00000513920 (C4orf22-002) 80335768-80873074 nonsense_mediated_decay
ENST00000514249 (C4orf22-004) 80335742-80649206 nonsense_mediated_decay
ENST00000621014 (C4orf22-201) 80944808-80963612 protein_coding
ENSG00000232327 (RP11-395C17.1)
 ENST00000506637 (RP11-395C17.1-001) 80386178-80388716 processed_pseudogene
CIL_0001VN_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029337-ENSMUSG00000057816 CGP 10090 5:98254184-98801910
GeneTranscriptPositionBiotype
ENSMUSG00000029337 (Fgf5)
fibroblast growth factor 5 		ENSMUST00000031280 (Fgf5-201) 98254184-98277030 protein_coding
ENSMUSG00000057816 (1700007G11Rik)
RIKEN cDNA 1700007G11 gene 		ENSMUST00000080333 (1700007G11Rik-201) 98329354-98801910 protein_coding
ENSMUSG00000067101 (1700010H22Rik)
RIKEN cDNA 1700010H22 gene 		ENSMUST00000086912 (1700010H22Rik-201) 98564197-98566762 lincRNA
ENSMUST00000187592 (1700010H22Rik-002) 98562782-98567004 lincRNA
ENSMUST00000189748 (1700010H22Rik-001) 98553629-98566926 lincRNA
ENSMUSG00000077424 (Gm24279)
predicted gene, 24279 		ENSMUST00000104236 (Gm24279-201) 98541484-98541614 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VN_0001ENSDARG00000035377ENSDART00000051256ENSDARG00000060526ENSDART00000085388ENSDARG00000088753ENSDART00000097872ENSDART00000131245CIL_0001VN_0002ENSG00000138675ENST00000312465ENST00000380628ENST00000456523ENST00000503413ENST00000507780ENSG00000197826ENST00000358105ENST00000502497ENST00000503883ENST00000508314ENST00000508675ENST00000512931ENST00000513920ENST00000514249ENST00000621014ENSG00000232327ENST00000506637CIL_0001VN_0003ENSMUSG00000029337ENSMUST00000031280ENSMUSG00000057816ENSMUST00000080333ENSMUSG00000067101ENSMUST00000086912ENSMUST00000187592ENSMUST00000189748ENSMUSG00000077424ENSMUST00000104236
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VN_0001ENSDARG00000035377ENSDART00000051256ENSDARG00000060526ENSDART00000085388ENSDARG00000088753ENSDART00000097872CIL_0001VN_0002ENSG00000138675ENST00000312465ENST00000456523ENST00000503413ENSG00000197826ENST00000358105ENST00000502497ENST00000503883ENST00000508675ENST00000512931ENST00000513920ENSG00000232327ENST00000506637CIL_0001VN_0003ENSMUSG00000029337ENSMUST00000031280ENSMUSG00000057816ENSMUST00000080333ENSMUSG00000067101ENSMUST00000086912ENSMUST00000187592ENSMUST00000189748ENSMUSG00000077424ENSMUST00000104236
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000035377 ENSDART00000051256 N/A N/A N/A 0.251±0.00 N/A N/A N/A 0.294±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000060526 ENSDART00000085388 N/A N/A N/A 1.226±0.33 N/A N/A 2.732±2.15 N/A N/A N/A 0.254±0.00 N/A N/A N/A
ENSDARG00000088753 ENSDART00000097872 N/A N/A N/A 0.918±0.18 N/A N/A N/A 2.792±2.62 N/A N/A 0.179±0.00 N/A N/A N/A
ENSDART00000131245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138675 ENST00000312465 N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000380628 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456523 0.030±0.00 0.068±0.00 N/A 0.083±0.03 0.052±0.01 0.119±0.00 0.237±0.20 0.257±0.00 0.048±0.00 0.076±0.00 0.050±0.00 0.042±0.01 0.013±0.00 N/A
ENST00000503413 N/A N/A N/A N/A N/A 0.054±0.00 0.153±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000507780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000197826 ENST00000358105 N/A N/A 0.206±0.00 0.281±0.00 N/A N/A N/A N/A N/A 1.651±0.29 N/A 1.518±1.27 0.045±0.00 13.826±4.51
ENST00000502497 N/A N/A N/A 0.845±0.00 0.437±0.00 N/A N/A N/A N/A 2.264±0.00 N/A N/A N/A 45.585±0.00
ENST00000503883 N/A N/A 0.683±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.101±0.00 N/A N/A
ENST00000508314 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508675 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.182±0.00 N/A 1.293±0.00 N/A 6.635±1.93
ENST00000512931 N/A N/A N/A 0.399±0.00 0.092±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513920 0.024±0.00 0.050±0.00 0.046±0.00 0.082±0.04 0.012±0.00 N/A 0.060±0.00 N/A 0.016±0.00 N/A N/A 0.019±0.00 N/A N/A
ENST00000514249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000232327 ENST00000506637 N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A 0.077±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029337 ENSMUST00000031280 0.047±0.03 0.059±0.00 0.018±0.01 0.216±0.16 N/A 0.053±0.04 N/A N/A 0.012±0.01 0.026±0.01 0.099±0.05 0.180±0.07 0.036±0.02 0.021±0.01
ENSMUSG00000057816 ENSMUST00000080333 0.070±0.00 N/A N/A 0.227±0.07 N/A 0.189±0.02 0.073±0.00 0.398±0.00 0.023±0.01 1.529±0.55 N/A 2.401±2.16 0.178±0.07 55.306±48.54
ENSMUSG00000067101 ENSMUST00000086912 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.587±0.65
ENSMUST00000187592 N/A N/A 0.038±0.02 N/A N/A N/A N/A N/A N/A 0.089±0.00 N/A 0.085±0.00 0.012±0.00 1.373±0.21
ENSMUST00000189748 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.075±0.00 N/A 0.030±0.00 N/A 1.077±0.23
ENSMUSG00000077424 ENSMUST00000104236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.051±0.00

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