C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 4 open reading frame 22
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000513920 C4orf22-002 ENSG00000197826 9606 + 4:80335768-80873074 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartLiverOvaryENST00000513920
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Liver Ovary
ENST00000513920 0.024±0.00 0.050±0.00 0.046±0.00 0.082±0.04 0.012±0.00 0.060±0.00 0.016±0.00 0.019±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069V CIL_00069V_0001 CGP 4:80183879-80336680
CIL_0001VN CIL_0001VN_0002 CGP 4:80266599-80963756
CIL_0005UO CIL_0005UO_0002 CGP 4:80335720-81057531

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080333 1700007G11Rik-201 protein_coding Mus_musculus 0 331
ENSMUST00000108492 Hif3a-002 protein_coding Mus_musculus 0.0000001 64
ENSMUST00000168162 Pdgfra-202 protein_coding Mus_musculus 0.00002 57
ENSMUST00000000476 Pdgfra-201 protein_coding Mus_musculus 0.00002 57

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