C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_00024X_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000075240-ENSG00000100422 CGP 9606 22:46576012-46738261
GeneTranscriptPositionBiotype
ENSG00000075240 (GRAMD4)
GRAM domain containing 4
ENST00000361034 (GRAMD4-201) 46626761-46679790 protein_coding
ENST00000406902 (GRAMD4-001) 46620402-46679785 protein_coding
ENST00000408031 (GRAMD4-002) 46674608-46679683 protein_coding
ENST00000431155 (GRAMD4-003) 46577129-46626899 protein_coding
ENST00000447351 (GRAMD4-004) 46576012-46637936 protein_coding
ENST00000456069 (GRAMD4-006) 46663107-46671167 protein_coding
ENST00000490378 (GRAMD4-005) 46626843-46637958 processed_transcript
ENSG00000100422 (CERK)
ceramide kinase
ENST00000216264 (CERK-001) 46684411-46738261 protein_coding
ENST00000443629 (CERK-002) 46686983-46738207 nonsense_mediated_decay
ENST00000460254 (CERK-003) 46735159-46738090 processed_transcript
ENST00000471929 (CERK-004) 46690055-46693812 processed_transcript
CIL_00024X_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035900-ENSMUSG00000035891 CGP 10090 15:86057695-86186141
GeneTranscriptPositionBiotype
ENSMUSG00000035891 (Cerk)
ceramide kinase
ENSMUST00000044332 (Cerk-001) 86139129-86186141 protein_coding
ENSMUST00000150767 (Cerk-003) 86139128-86159468 retained_intron
ENSMUST00000156546 (Cerk-002) 86140321-86152448 protein_coding
ENSMUSG00000035900 (Gramd4)
GRAM domain containing 4
ENSMUST00000088931 (Gramd4-001) 86057695-86137634 protein_coding
ENSMUST00000123349 (Gramd4-003) 86058872-86137631 nonsense_mediated_decay
ENSMUST00000123474 (Gramd4-005) 86067813-86122261 processed_transcript
ENSMUST00000138134 (Gramd4-002) 86058727-86137618 protein_coding
ENSMUST00000147286 (Gramd4-004) 86074733-86091434 processed_transcript
ENSMUSG00000088357 (Gm24011)
predicted gene, 24011
ENSMUST00000157732 (Gm24011-201) 86149584-86149851 misc_RNA
ENSMUSG00000089680 (Gm15722)
predicted gene 15722
ENSMUST00000159271 (Gm15722-001) 86087640-86090060 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00024X_0001ENSG00000075240ENST00000361034ENST00000406902ENST00000408031ENST00000431155ENST00000447351ENST00000456069ENST00000490378ENSG00000100422ENST00000216264ENST00000443629ENST00000460254ENST00000471929CIL_00024X_0002ENSMUSG00000035891ENSMUST00000044332ENSMUST00000150767ENSMUST00000156546ENSMUSG00000035900ENSMUST00000088931ENSMUST00000123349ENSMUST00000123474ENSMUST00000138134ENSMUST00000147286ENSMUSG00000088357ENSMUST00000157732ENSMUSG00000089680ENSMUST00000159271
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00024X_0001ENSG00000075240ENST00000361034ENST00000406902ENST00000408031ENST00000447351ENSG00000100422ENST00000216264ENST00000443629CIL_00024X_0002ENSMUSG00000035891ENSMUST00000044332ENSMUST00000150767ENSMUST00000156546ENSMUSG00000035900ENSMUST00000088931ENSMUST00000123349ENSMUST00000123474ENSMUST00000138134ENSMUSG00000088357ENSMUST00000157732ENSMUSG00000089680ENSMUST00000159271
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000075240 ENST00000361034 N/A 1.228±0.00 0.850±0.00 N/A 2.424±0.32 1.015±0.55 5.775±0.00 2.287±0.30 N/A N/A 2.037±0.68 5.275±0.71 3.034±0.89 2.222±1.66
ENST00000406902 N/A N/A N/A 0.957±0.00 N/A N/A N/A N/A N/A 1.207±0.00 N/A N/A N/A N/A
ENST00000408031 3.886±0.00 3.209±0.00 N/A N/A 4.024±0.00 1.208±0.00 1.681±0.00 3.734±0.00 5.967±0.00 2.944±0.00 2.944±0.00 7.816±6.84 2.168±0.63 3.106±0.38
ENST00000431155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447351 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.026±0.00 N/A 8.665±0.00 N/A N/A
ENST00000456069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100422 ENST00000216264 9.137±0.00 6.057±0.00 2.212±0.00 11.520±3.56 5.506±0.00 5.274±3.36 11.988±8.77 14.234±0.00 3.762±2.15 11.263±0.00 5.700±0.00 10.016±5.45 5.648±0.69 6.835±0.06
ENST00000443629 N/A N/A 0.760±0.00 N/A N/A 3.353±0.00 2.361±0.00 1.097±0.00 2.661±0.00 2.187±0.00 3.114±0.00 2.656±0.00 N/A N/A
ENST00000460254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035891 ENSMUST00000044332 4.668±1.48 7.740±1.67 2.656±1.23 5.825±0.61 8.674±2.33 9.414±2.22 5.693±0.43 4.199±0.82 1.297±0.87 8.871±2.61 1.062±0.33 7.994±3.14 3.603±1.14 12.629±5.09
ENSMUST00000150767 6.481±2.36 16.834±2.42 N/A 4.061±0.18 9.510±4.87 9.109±3.23 4.540±0.37 2.980±0.71 0.895±0.27 13.313±1.71 0.228±0.04 7.182±4.05 2.433±0.67 6.653±3.84
ENSMUST00000156546 N/A 6.349±0.00 N/A 3.144±0.00 7.993±1.39 N/A 4.121±0.86 3.560±0.57 0.641±0.12 6.130±0.00 0.450±0.00 N/A 2.142±0.00 10.201±0.89
ENSMUSG00000035900 ENSMUST00000088931 10.360±2.83 2.869±0.90 4.066±0.22 9.190±7.57 7.614±2.64 4.971±1.75 11.000±1.20 6.337±0.66 3.131±1.89 7.538±0.73 3.595±0.71 5.490±2.61 4.014±2.25 0.258±0.21
ENSMUST00000123349 2.215±0.72 N/A 0.933±0.28 2.932±0.15 2.557±0.65 2.077±0.05 N/A N/A 0.659±0.21 1.362±0.12 N/A 1.589±0.40 0.474±0.00 0.032±0.00
ENSMUST00000123474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.284±0.00 22.317±8.59 1.312±0.00
ENSMUST00000138134 2.494±0.30 4.304±0.00 N/A 4.021±1.91 5.173±2.57 6.565±2.65 3.071±0.70 3.284±0.60 1.152±0.44 4.499±1.05 0.770±0.00 4.830±1.75 1.161±0.55 0.209±0.03
ENSMUST00000147286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088357 ENSMUST00000157732 0.448±0.00 0.672±0.24 0.135±0.05 0.120±0.03 0.324±0.00 N/A 0.274±0.00 0.674±0.49 0.236±0.00 0.401±0.05 N/A 0.775±0.49 0.355±0.26 0.609±0.45
ENSMUSG00000089680 ENSMUST00000159271 0.155±0.11 0.065±0.00 0.079±0.01 0.080±0.07 N/A 0.177±0.10 N/A 0.114±0.00 0.098±0.05 0.188±0.05 0.059±0.00 0.171±0.05 0.179±0.10 N/A

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