C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00028J_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124227-ENSG00000124209 CGP 9606 20:58218495-58367507
GeneTranscriptPositionBiotype
ENSG00000124209 (RAB22A)
RAB22A, member RAS oncogene family 		ENST00000244040 (RAB22A-001) 58309696-58367507 protein_coding
ENST00000488949 (RAB22A-002) 58309758-58346048 processed_transcript
ENSG00000124224 (PPP4R1L)
protein phosphatase 4, regulatory subunit 1-like (pseudogene) 		ENST00000244070 (PPP4R1L-005) 58245746-58309439 processed_transcript
ENST00000334187 (PPP4R1L-012) 58231789-58286399 transcribed_unprocessed_pseudogene
ENST00000422302 (PPP4R1L-002) 58247056-58251766 processed_transcript
ENST00000457990 (PPP4R1L-008) 58232777-58240548 processed_transcript
ENST00000467784 (PPP4R1L-009) 58232804-58235887 retained_intron
ENST00000473210 (PPP4R1L-007) 58239755-58243705 processed_transcript
ENST00000493688 (PPP4R1L-003) 58237919-58309439 processed_transcript
ENST00000495058 (PPP4R1L-004) 58242370-58272825 retained_intron
ENST00000497138 (PPP4R1L-001) 58228940-58246244 processed_transcript
ENST00000606437 (PPP4R1L-011) 58239505-58239987 retained_intron
ENSG00000124227 (ANKRD60)
ankyrin repeat domain 60 		ENST00000457363 (ANKRD60-001) 58218495-58228653 protein_coding
CIL_00028J_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027517-ENSMUSG00000027519 CGP 10090 2:173568666-173707343
GeneTranscriptPositionBiotype
ENSMUSG00000027517 (Ankrd60)
ankyrin repeat domain 60 		ENSMUST00000109112 (Ankrd60-003) 173568704-173578198 protein_coding
ENSMUST00000119453 (Ankrd60-001) 173568666-173578365 protein_coding
ENSMUST00000147693 (Ankrd60-002) 173572387-173578273 processed_transcript
ENSMUSG00000027519 (Rab22a)
RAB22A, member RAS oncogene family 		ENSMUST00000029024 (Rab22a-001) 173659760-173707343 protein_coding
ENSMUST00000109110 (Rab22a-003) 173659856-173701154 protein_coding
ENSMUST00000142820 (Rab22a-002) 173659760-173707315 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00028J_0001ENSG00000124209ENST00000244040ENST00000488949ENSG00000124224ENST00000244070ENST00000334187ENST00000422302ENST00000457990ENST00000467784ENST00000473210ENST00000493688ENST00000495058ENST00000497138ENST00000606437ENSG00000124227ENST00000457363CIL_00028J_0002ENSMUSG00000027517ENSMUST00000109112ENSMUST00000119453ENSMUST00000147693ENSMUSG00000027519ENSMUST00000029024ENSMUST00000109110ENSMUST00000142820
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00028J_0001ENSG00000124209ENST00000244040ENSG00000124224ENST00000244070ENST00000334187ENST00000422302ENST00000493688ENST00000495058ENST00000497138ENST00000606437ENSG00000124227ENST00000457363CIL_00028J_0002ENSMUSG00000027517ENSMUST00000109112ENSMUST00000119453ENSMUST00000147693ENSMUSG00000027519ENSMUST00000029024ENSMUST00000109110ENSMUST00000142820
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124209 ENST00000244040 4.833±0.00 3.829±0.00 1.994±0.00 7.449±0.02 5.232±0.07 3.404±0.54 1.372±0.38 3.226±1.06 2.799±0.99 3.023±0.33 1.012±0.49 5.663±1.11 2.300±0.70 4.475±0.81
ENST00000488949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000124224 ENST00000244070 0.448±0.00 1.801±0.00 N/A N/A 1.814±0.00 1.718±0.00 N/A N/A N/A 1.436±0.00 N/A 0.898±0.00 0.295±0.00 N/A
ENST00000334187 N/A N/A N/A 0.280±0.00 N/A N/A N/A N/A 0.155±0.00 0.641±0.00 0.079±0.00 N/A N/A N/A
ENST00000422302 N/A N/A N/A N/A 4.753±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493688 N/A N/A N/A N/A 1.043±0.00 N/A N/A N/A 0.606±0.00 N/A N/A N/A N/A N/A
ENST00000495058 N/A N/A N/A 0.076±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497138 N/A N/A 0.340±0.00 0.401±0.00 N/A 0.185±0.00 0.153±0.00 N/A 0.067±0.00 0.313±0.00 N/A 0.362±0.00 0.283±0.00 1.023±0.00
ENST00000606437 N/A N/A N/A N/A N/A N/A N/A 0.812±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000124227 ENST00000457363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.340±1.44
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027517 ENSMUST00000109112 N/A N/A N/A 0.020±0.00 0.055±0.00 N/A 0.040±0.00 0.059±0.02 N/A N/A N/A N/A 0.007±0.00 35.973±0.00
ENSMUST00000119453 N/A N/A N/A 0.015±0.00 N/A N/A 0.049±0.00 0.218±0.00 N/A N/A N/A N/A 0.043±0.00 203.935±50.06
ENSMUST00000147693 0.092±0.00 N/A N/A N/A N/A 0.124±0.05 0.049±0.02 0.142±0.00 N/A 0.082±0.00 N/A N/A N/A 93.533±0.00
ENSMUSG00000027519 ENSMUST00000029024 6.842±1.06 6.709±0.84 7.982±0.69 4.285±0.22 4.647±0.64 7.140±0.45 4.672±0.48 7.233±0.32 3.235±0.41 7.716±0.33 6.716±0.56 5.954±0.89 10.991±3.87 5.066±0.24
ENSMUST00000109110 15.464±0.00 72.325±9.52 N/A N/A 35.325±5.70 55.839±8.23 N/A 16.194±6.25 11.143±1.49 24.039±11.49 N/A 26.185±7.57 25.255±0.00 23.462±0.00
ENSMUST00000142820 N/A N/A N/A N/A 0.787±0.00 N/A 0.693±0.00 N/A 0.685±0.10 N/A 0.857±0.00 N/A N/A N/A

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