C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB22A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000244040 RAB22A-001 ENSG00000124209 9606 + 20:58309696-58367507 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000244040
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000244040 4.833±0.00 3.829±0.00 1.994±0.00 7.449±0.02 5.232±0.07 3.404±0.54 1.372±0.38 3.226±1.06 2.799±0.99 3.023±0.33 1.012±0.49 5.663±1.11 2.300±0.70 4.475±0.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028J CIL_00028J_0001 CGP 20:58218495-58367507
CIL_0006IO CIL_0006IO_0002 CGP 20:58309696-58451101

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 TAS:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005769 IDA early endosome
GO:0005886 IDA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006897 IDA endocytosis
GO:0006913 IEA nucleocytoplasmic transport
GO:0007032 IEP endosome organization
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0015629 IEA actin cytoskeleton
GO:0016020 IEA membrane
GO:0019003 IDA GDP binding
GO:0042995 IEA cell projection
GO:0045335 IDA phagocytic vesicle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029024 Rab22a-001 protein_coding Mus_musculus 0 970
ENSMUST00000109110 Rab22a-003 protein_coding Mus_musculus 0 747
ENSMUST00000142820 Rab22a-002 nonsense_mediated_decay Mus_musculus 0 468
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000000006 69

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