C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002BM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101323-ENSG00000125827 CGP 9606 20:7882981-8019829
GeneTranscriptPositionBiotype
ENSG00000101323 (HAO1)
hydroxyacid oxidase (glycolate oxidase) 1 		ENST00000378789 (HAO1-001) 7882981-7940474 protein_coding
ENSG00000125827 (TMX4)
thioredoxin-related transmembrane protein 4 		ENST00000246024 (TMX4-001) 7977348-8019829 protein_coding
ENST00000462384 (TMX4-002) 7987310-8019646 nonsense_mediated_decay
ENST00000527925 (TMX4-003) 7983794-8019805 protein_coding
ENST00000530935 (TMX4-004) 7987324-8013930 processed_transcript
ENSG00000229766 (RP5-971N18.3)
 ENST00000457707 (RP5-971N18.3-001) 8019902-8027956 antisense
ENST00000607924 (RP5-971N18.3-002) 8019223-8027725 antisense
ENST00000608601 (RP5-971N18.3-003) 8022626-8043512 antisense
CIL_0002BM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027261-ENSMUSG00000034723 CGP 10090 2:134497361-134644145
GeneTranscriptPositionBiotype
ENSMUSG00000027261 (Hao1)
hydroxyacid oxidase 1, liver 		ENSMUST00000028704 (Hao1-001) 134497361-134554368 protein_coding
ENSMUST00000140794 (Hao1-002) 134530760-134554307 processed_transcript
ENSMUSG00000034723 (Tmx4)
thioredoxin-related transmembrane protein 4 		ENSMUST00000038228 (Tmx4-001) 134594185-134644145 protein_coding
ENSMUST00000110119 (Tmx4-004) 134639491-134644090 protein_coding
ENSMUST00000110120 (Tmx4-003) 134607466-134644041 protein_coding
ENSMUST00000137377 (Tmx4-002) 134599003-134644132 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002BM_0001ENSG00000101323ENST00000378789ENSG00000125827ENST00000246024ENST00000462384ENST00000527925ENST00000530935ENSG00000229766ENST00000457707ENST00000607924ENST00000608601CIL_0002BM_0002ENSMUSG00000027261ENSMUST00000028704ENSMUST00000140794ENSMUSG00000034723ENSMUST00000038228ENSMUST00000110119ENSMUST00000110120ENSMUST00000137377
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002BM_0001ENSG00000101323ENST00000378789ENSG00000125827ENST00000246024ENSG00000229766ENST00000457707CIL_0002BM_0002ENSMUSG00000027261ENSMUST00000028704ENSMUST00000140794ENSMUSG00000034723ENSMUST00000038228ENSMUST00000110119ENSMUST00000137377
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101323 ENST00000378789 N/A N/A N/A N/A 0.256±0.00 N/A 0.060±0.00 42.102±41.82 74.568±0.00 N/A N/A N/A N/A 0.118±0.00
ENSG00000125827 ENST00000246024 12.729±0.00 10.177±0.00 5.935±0.00 17.421±1.62 7.414±0.65 9.135±4.82 21.794±12.27 8.550±5.20 8.012±2.45 6.538±2.51 7.955±4.18 9.097±3.49 6.300±1.94 58.681±28.52
ENST00000462384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229766 ENST00000457707 0.012±0.00 N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A 0.041±0.00 N/A 0.018±0.01 N/A 2.184±1.31
ENST00000607924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027261 ENSMUST00000028704 N/A N/A 0.004±0.00 0.011±0.00 0.104±0.01 0.051±0.00 N/A N/A 28.476±20.56 0.039±0.00 0.023±0.00 0.068±0.03 0.080±0.02 0.096±0.04
ENSMUST00000140794 0.121±0.00 N/A N/A N/A 0.183±0.07 N/A N/A N/A N/A N/A N/A N/A N/A 0.187±0.09
ENSMUSG00000034723 ENSMUST00000038228 3.660±0.88 6.223±1.25 2.534±1.69 10.446±5.69 3.233±0.39 1.969±0.51 8.635±0.52 4.112±0.29 3.265±1.45 5.195±0.40 2.068±0.17 8.139±3.50 2.761±0.78 9.550±0.74
ENSMUST00000110119 N/A 30.683±7.93 N/A N/A N/A 4.600±0.76 N/A N/A 1.603±0.35 N/A N/A 10.001±3.42 N/A N/A
ENSMUST00000110120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.042±0.00 N/A N/A

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