C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002T3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000090912-ENSDARG00000038154 CGP 7955 17:43066482-43081078
GeneTranscriptPositionBiotype
ENSDARG00000038154 (ISCA2)
iron-sulfur cluster assembly 2 		ENSDART00000055611 (ISCA2-001) 43077316-43081078 protein_coding
ENSDART00000154863 (ISCA2-002) 43077341-43080661 protein_coding
ENSDARG00000090912 (npc2)
Niemann-Pick disease, type C2 		ENSDART00000050399 (npc2-001) 43075104-43076615 protein_coding
ENSDART00000124663 (npc2-201) 43066482-43076323 protein_coding
ENSDART00000132754 (npc2-004) 43075474-43076550 protein_coding
ENSDART00000139875 (npc2-002) 43075321-43076611 retained_intron
ENSDARG00000096979 (NPC2 (2 of 2))
Niemann-Pick disease, type C2 		ENSDART00000002945 (NPC2 (2 of 2)-001) 43066449-43067255 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002T3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000119655-ENSG00000165898 CGP 9606 14:74476192-74497106
GeneTranscriptPositionBiotype
ENSG00000119655 (NPC2)
Niemann-Pick disease, type C2 		ENST00000238633 (NPC2-008) 74479942-74493291 protein_coding
ENST00000434013 (NPC2-003) 74476192-74493307 protein_coding
ENST00000541064 (NPC2-002) 74479223-74493281 protein_coding
ENST00000553490 (NPC2-006) 74480082-74493339 protein_coding
ENST00000554482 (NPC2-009) 74479942-74493242 nonsense_mediated_decay
ENST00000555592 (NPC2-005) 74484411-74493608 protein_coding
ENST00000555619 (NPC2-001) 74479933-74493512 protein_coding
ENST00000556009 (NPC2-004) 74480096-74494177 protein_coding
ENST00000557510 (NPC2-007) 74480187-74493347 protein_coding
ENSG00000165898 (ISCA2)
iron-sulfur cluster assembly 2 		ENST00000298818 (ISCA2-002) 74493756-74495366 protein_coding
ENST00000554924 (ISCA2-003) 74493765-74495130 protein_coding
ENST00000555139 (ISCA2-004) 74493772-74495022 retained_intron
ENST00000556816 (ISCA2-001) 74493720-74497106 protein_coding
ENSG00000258769 (RAP1AP)
RAP1A, member of RAS oncogene family pseudogene 		ENST00000554629 (RAP1AP-001) 74482985-74483435 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0002T3_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021242-ENSMUSG00000021241 CGP 10090 12:84754560-84775089
GeneTranscriptPositionBiotype
ENSMUSG00000021241 (Isca2)
iron-sulfur cluster assembly 2 homolog (S. cerevisiae) 		ENSMUST00000021667 (Isca2-201) 84773270-84775089 protein_coding
ENSMUSG00000021242 (Npc2)
Niemann-Pick type C2 		ENSMUST00000021668 (Npc2-201) 84754560-84773112 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002T3_0001ENSDARG00000038154ENSDART00000055611ENSDART00000154863ENSDARG00000090912ENSDART00000050399ENSDART00000124663ENSDART00000132754ENSDART00000139875ENSDARG00000096979ENSDART00000002945CIL_0002T3_0002ENSG00000119655ENST00000238633ENST00000434013ENST00000541064ENST00000553490ENST00000554482ENST00000555592ENST00000555619ENST00000556009ENST00000557510ENSG00000165898ENST00000298818ENST00000554924ENST00000555139ENST00000556816ENSG00000258769ENST00000554629CIL_0002T3_0003ENSMUSG00000021241ENSMUST00000021667ENSMUSG00000021242ENSMUST00000021668
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002T3_0001ENSDARG00000038154ENSDART00000055611ENSDART00000154863ENSDARG00000090912ENSDART00000050399ENSDART00000124663ENSDART00000132754ENSDARG00000096979ENSDART00000002945CIL_0002T3_0002ENSG00000119655ENST00000238633ENST00000553490ENST00000554482ENST00000555592ENST00000555619ENST00000556009ENSG00000165898ENST00000298818ENST00000556816ENSG00000258769ENST00000554629CIL_0002T3_0003ENSMUSG00000021241ENSMUST00000021667ENSMUSG00000021242ENSMUST00000021668
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000038154 ENSDART00000055611 N/A N/A N/A 28.329±5.75 N/A N/A 125.204±81.06 37.048±17.67 1.153±0.00 N/A 8.966±0.00 N/A N/A N/A
ENSDART00000154863 N/A N/A N/A N/A N/A N/A 10.713±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000090912 ENSDART00000050399 N/A N/A N/A 23.961±6.50 N/A N/A 46.479±9.51 95.911±20.80 4.359±0.00 N/A 14.253±0.00 N/A N/A N/A
ENSDART00000124663 N/A N/A N/A N/A N/A N/A 22.188±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000132754 N/A N/A N/A N/A N/A N/A N/A N/A 2.219±0.00 N/A N/A N/A N/A N/A
ENSDART00000139875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000096979 ENSDART00000002945 N/A N/A N/A N/A N/A N/A 25.431±0.00 46.393±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119655 ENST00000238633 70.637±0.00 56.410±0.00 4.131±0.00 10.351±3.80 24.103±16.20 24.569±0.00 13.376±10.15 54.915±0.00 19.934±8.36 92.792±62.76 8.863±0.00 33.330±21.28 72.671±34.87 70.138±14.85
ENST00000434013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553490 N/A N/A N/A N/A N/A N/A N/A N/A 19.283±0.00 N/A N/A N/A N/A N/A
ENST00000554482 N/A 47.164±0.00 N/A 19.771±0.00 53.446±0.00 N/A 1.686±0.00 4.324±0.00 N/A N/A N/A N/A N/A 70.757±0.00
ENST00000555592 N/A N/A 5.696±0.00 N/A 13.413±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555619 66.870±0.00 41.299±0.00 N/A 21.290±0.00 6.501±0.00 24.978±16.66 7.096±6.25 23.540±15.85 8.763±0.00 15.255±0.00 6.325±4.60 110.447±84.95 169.573±13.30 75.716±0.28
ENST00000556009 53.223±0.00 45.505±0.00 N/A 21.286±0.00 N/A 51.926±0.00 20.163±0.00 75.831±0.00 28.226±0.00 165.819±0.00 18.366±0.00 N/A N/A 134.210±0.00
ENST00000557510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165898 ENST00000298818 N/A N/A N/A N/A N/A N/A 12.741±0.00 N/A N/A N/A 4.722±3.14 N/A N/A N/A
ENST00000554924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556816 N/A N/A 1.200±0.00 2.050±0.00 1.112±0.00 1.563±0.00 0.629±0.00 N/A N/A N/A 0.580±0.00 0.459±0.00 N/A N/A
ENSG00000258769 ENST00000554629 0.025±0.00 0.204±0.00 N/A 0.417±0.39 N/A 0.023±0.00 0.070±0.00 0.050±0.00 N/A N/A N/A 0.107±0.09 N/A 0.230±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021241 ENSMUST00000021667 19.793±13.71 19.756±1.72 23.977±3.75 16.222±10.03 17.821±9.40 6.396±0.91 26.221±2.34 17.095±4.27 24.743±11.38 7.493±0.81 13.462±1.51 8.774±4.55 12.247±6.71 33.092±14.61
ENSMUSG00000021242 ENSMUST00000021668 205.901±90.17 78.124±8.46 34.848±8.02 6.147±3.35 141.620±47.89 91.812±8.01 18.175±4.00 57.997±4.47 24.941±5.08 340.164±91.13 7.844±1.00 88.566±22.83 58.010±25.75 16.851±10.05

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